pathway_subtyping/__init__.py,sha256=thEHbtMrpkjkzGWJm3FdoiWWDZViCrAbxtjF_wrcTyI,12730
pathway_subtyping/__main__.py,sha256=j2Mnic6L3JxRwK9SWBO-gbcIqbCRWbu6uZr5Jkr303M,128
pathway_subtyping/ancestry.py,sha256=GQ8qcsUaICePJglD_J2Rwt81nL38h4bzYD1OSIpytTM,24240
pathway_subtyping/batch_correction.py,sha256=x9TsSq1dj3E8nc-DehNR5IduMKmI38IGxBqSwoRu6TQ,21812
pathway_subtyping/benchmark.py,sha256=HrB4nq5RiRDdHbOdp-Xb8buKkrE_9NwrWi_rL6JWpjM,19717
pathway_subtyping/characterization.py,sha256=zwdMGSH_4XakTNEpZRZ1XSjPLHuBHUuyD1YpPHx-C8E,32695
pathway_subtyping/cli.py,sha256=XnQ2KtFlKaqH9XVf80dR0Eg8zZCTWqdn5U3GhpdHKCA,2800
pathway_subtyping/clustering.py,sha256=ACpX0J7vt92y--Y7KviKuxurxyb8_Hjaqv-i6sz8X0o,17724
pathway_subtyping/clustering_dl.py,sha256=WxZp2JicuMDRUMo5OtbbHgljXS6Ar7oVbD70D5navtY,6864
pathway_subtyping/config.py,sha256=5iRuqScBGoqjL31gSowILYJ3xdK_L7dRQnJ6XV3jq-s,20993
pathway_subtyping/cross_cohort.py,sha256=1ZJSRbH0E3wnx2o9pONn_8rvNnO9Qec4bdvm9H8Tx50,16958
pathway_subtyping/cross_modal_validation.py,sha256=BXcXyWyUgTZnMg2VU9oTSsC5jBvUgqvIBuuBFKROz68,20948
pathway_subtyping/data_quality.py,sha256=EWvQ0_sgx85VlCxSDmHzkWmVjf1dCKOSk1kKYABsmZA,22817
pathway_subtyping/deconvolution.py,sha256=3gjxCkZIP_8UXlhYTfK4RPwaHi6cU_WN-5-MxAn8y3E,19069
pathway_subtyping/expression.py,sha256=LCWoPhdzVnxuWShXOivBVkPZcdkIX8IUukw5CAQnNjY,24646
pathway_subtyping/kg_sensitivity.py,sha256=fb2jNGUV-34sBuptK4KFcHq-kz0rSUOKyutemXVJCxg,31500
pathway_subtyping/multi_omic.py,sha256=veeilpcOU1oKFFmniP10T0m6-GihN3xqEHwXYp5NZrU,29815
pathway_subtyping/network_propagation.py,sha256=5ZicUZOazUt8rfpyM5mt0pY5QECzRN6QMhEhUh3VcH4,19274
pathway_subtyping/pipeline.py,sha256=DOqGYWqBSs2bKrX-bSB4Xbm16Ep4UAeuD4laXP2Nw1U,65919
pathway_subtyping/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
pathway_subtyping/sensitivity.py,sha256=tlf6ESX22kZMePErYCUdndzBrSht1vnGGrD6SqXp7yM,17851
pathway_subtyping/signaling_databases.py,sha256=rML_vmBVX9BgsfJSeI7tW7UaskuhLF_DBif1PEsZpm8,24662
pathway_subtyping/simulation.py,sha256=uoRyEXq0jNDSNDfQx6tl8r9TjxLpyvVZdtb_s4Md8FI,31252
pathway_subtyping/single_cell.py,sha256=xmlnrjD9f2S1gKGT-3qHVza8pIz187wVoDJioe5DjFE,29064
pathway_subtyping/statistical_rigor.py,sha256=ya3r7aqpxrEZGX9_INw-bgbvB93fFvLc4XrBvmdccsM,33970
pathway_subtyping/threshold_calibration.py,sha256=PDMqDJYrUhvsHP_nIxNb1PXOpH88AUQHaY8VLHveCvw,25080
pathway_subtyping/validation.py,sha256=FznSrwP_kLurOtxhpInKJPqX18-OOeFdG9PkCCmPWsA,42955
pathway_subtyping/validation_datasets.py,sha256=_Nc64_m1S7BAH9nUni8ZY9VSZnYus478GWe4Vki4vqk,43351
pathway_subtyping/variant_qc.py,sha256=E4_vna4qDmxdG1St2XMQdMgnvSGBnPi7UBzRkXyvR40,14736
pathway_subtyping/visualization.py,sha256=kudV6dbk3vYE3Qtcx1-SOtE3KwUUE2_6wFqXwjPbGMw,31452
pathway_subtyping/active/__init__.py,sha256=Vb-i_ELso-h4U5r3vAtkVdOdNS5SvGN1Q7CqnINddGs,738
pathway_subtyping/active/selector.py,sha256=Gq-AAOCtni2CUeLP4cP0pnC8rOpYfWh4mFc2JtQ1ssQ,9152
pathway_subtyping/autism/__init__.py,sha256=Xog1a2k3zAeuKdyRzpKbDZn4XJfW6PrwDqA_pkPAM0k,1277
pathway_subtyping/autism/neurosymbolic/__init__.py,sha256=Y_qFDeULE3DLMMFA72Ajvbyv7_DRy3XwgFih6ncNi28,80
pathway_subtyping/autism/neurosymbolic/combiner.py,sha256=BdkMXpX6szd_n7YBMbqbzvJMOffnL_JAHnMvxlJj_p8,4882
pathway_subtyping/autism/rules/__init__.py,sha256=AZwn_HmpREkIgCDWDbFqtRQWSb2zsLKV8azWpdE6LV8,67
pathway_subtyping/autism/rules/biological_rules.py,sha256=Bw_2M5tYNrYXK7SOH_lDehFheySs9LRh88xhWKZ773k,12121
pathway_subtyping/autism/rules/conditions.py,sha256=ExpWZDbWaH8em-aOXt-j5VZcgmI9vCD1eX15mKQvtio,11760
pathway_subtyping/autism/rules/engine.py,sha256=AjQTP_U3j7yFIA3Nd5oKtQsmGBf692lnNxouZ8jnrI4,11178
pathway_subtyping/autism/rules/explanation.py,sha256=at3cqRMjwqs-X4lId1tayIoJRalYfH63UH2zaoSgstI,7765
pathway_subtyping/autism/therapeutic/__init__.py,sha256=Eu_IYqMadPqJpq7TBLTMkemAxRxeAzbAJtwr1LYSl14,80
pathway_subtyping/autism/therapeutic/drug_mapping.py,sha256=2QnqirRI_MsuTrxpnSmr9RIivTzKtxg4mRxTqoE_AkI,6492
pathway_subtyping/autism/therapeutic/evidence.py,sha256=T8uWf8xCPT-y1bEypq54mTef_uuplLdzm7-UaqpOsG0,9305
pathway_subtyping/autism/therapeutic/ranking.py,sha256=4UBU6NfywY-hz9JaeqZBqNqtbaRlhYLL-SpZgK7D3g4,9274
pathway_subtyping/causal/__init__.py,sha256=1vG8GnSasTYGb8HrQPopS9eEpgwVogu7jaFhdDhDk0I,1041
pathway_subtyping/causal/invariant.py,sha256=mBcMveof2XTdiJdA2PjZ9eIn_S5HNFIdBTp50I1_BhI,11389
pathway_subtyping/data/pathways/autism_pathways.gmt,sha256=L45j93XYMFGuUkfEQsPFOi2wrEPQviNn074EO_ixdo4,2161
pathway_subtyping/data/pathways/bipolar_pathways.gmt,sha256=gMVJ80w7kHxVmt5yiCeonbL3VZzp_2m06uynTDz8t_o,2701
pathway_subtyping/data/pathways/epilepsy_pathways.gmt,sha256=o5f51dauyqs2_8-uo6VdW7K7EpdjCchUk_wq_8PovOU,2112
pathway_subtyping/data/pathways/intellectual_disability_pathways.gmt,sha256=8qBxHaR03bBwA2TB16O5AkXBySLZfKmYP5htdU8ISJE,3328
pathway_subtyping/data/pathways/parkinsons_pathways.gmt,sha256=mtGobBy1ULuEJKnU0OJ6GN5bK0sJS3Y-HVDz0-7ig_Q,2546
pathway_subtyping/data/pathways/schizophrenia_pathways.gmt,sha256=AH5hrpr3bFVVpjMRk6I9_tj62O6WZjbnUks6N0qeEvQ,2385
pathway_subtyping/discreteness/__init__.py,sha256=a8qdxHrKjhAG90xjFEIgJLpnnKWWV_VMtxyI3eRXaQI,2874
pathway_subtyping/discreteness/gate_a_discreteness_null.py,sha256=a32Ol1hXimLmQ0eS0Mu-KSmJDDKHjIHXu4S5PsZsvSY,21343
pathway_subtyping/discreteness/gate_c_conformal_membership.py,sha256=qgvZjtb8zHhYftwIJtFFwf8CFpWPSZUUs11bVfK4SYo,9313
pathway_subtyping/discreteness/gate_c_reframed.py,sha256=uDfeFZYKN3Pf5Vs-nlk_tglk3KdYbSyTz2HkmSQuUCo,6691
pathway_subtyping/embed/__init__.py,sha256=r0u4WGWdhp8C7bwqEacfS9iANhY6FrBwZE6Jr-0z8ZQ,1394
pathway_subtyping/embed/base.py,sha256=ZQO3hqXhTCddHXQPOw8rVrXCPYcMKaFUwXtReqNc5rM,2427
pathway_subtyping/embed/cache.py,sha256=4JQ9CJx7tYBObcq6NyohA_yZRBLPm-hCyBvOB71xA9o,5718
pathway_subtyping/embed/nicheformer.py,sha256=S0uOH9KQvKMO_kzjQgYFegYPzH4WXnREirUcZcjp6VM,8058
pathway_subtyping/embed/scgpt.py,sha256=MLiRhIsPglSh5u_Qa-vAz1Nvm8ldDBA6MbP9we1MvR0,6782
pathway_subtyping/genesets/__init__.py,sha256=214OdXQ__AFiGlh2ZvDUxdcwmALqiZtP-wmvMTNTOn0,866
pathway_subtyping/genesets/regulatory.py,sha256=coPoh7uP-ZcXDEq1duHJkK-Q35MdUk_FF-MrIe8d5VE,11325
pathway_subtyping/genetics/__init__.py,sha256=r5QTCFQOqbOcqmVCqezzjgD_TzT36QcC7D-NK0uq7Ak,2415
pathway_subtyping/genetics/gwas_enrichment.py,sha256=XGtztPLm8UJ62cChMzWj7zXnpdvmMh7QGJx-8BCRolY,7450
pathway_subtyping/genetics/somatic_anchoring.py,sha256=jMrEe29zWi43BJIy2JJC2FYG32StnNcWGL3xxexMcr8,7891
pathway_subtyping/gnn/__init__.py,sha256=E0TjY2tGBCyaD2pg1g2HPUfg6dHvqKjWXgINlIo9FzI,1516
pathway_subtyping/gnn/attention.py,sha256=3tNqbu9sA3Ua6ZZ6I65eR8Jq3056lMs_pBtAkG6BTOA,5722
pathway_subtyping/gnn/config.py,sha256=_F_j2mDtJpS5VvM_SUqpJFUTli9VwGXxjEkUy0CQVF8,1539
pathway_subtyping/gnn/kg_embeddings.py,sha256=MdfJJq9QjLYiK30J4rGso1RpQadYo3H7Vj4NLxpdt6Y,14198
pathway_subtyping/gnn/layers.py,sha256=TPTLFnVoufvmx9XKYyBzKzcl1CcINP82MGC51DGXwpI,6620
pathway_subtyping/gnn/model.py,sha256=VH2tdJPbQC_P2ffWr5h9u0P0rIMgHhIzzdH9CGWfrSU,11093
pathway_subtyping/gnn/embeddings/__init__.py,sha256=YrizaMFTjwULaC-Mu0VfWH_TD1HIGD9q2GA5heqvE3s,534
pathway_subtyping/gnn/embeddings/fusion.py,sha256=XjQgLQyaO2DQ_UZmilRLUUhhwACCHm5M8mDr9Digcmk,5385
pathway_subtyping/harmonize/__init__.py,sha256=28_W5uXhTrcHpj7h6_G8YO3K8l9iuYNWf1oqm7IbUII,1486
pathway_subtyping/harmonize/align.py,sha256=B_lwo2bu-o4Nr0xZB9hI1XP1-u8J5izjZuwe12khlNo,10198
pathway_subtyping/harmonize/benchmark.py,sha256=OkarTiBj7SQVkJXxy48XWRgd_HhJ_Ea3AlfGvzz0ol0,10755
pathway_subtyping/harmonize/confidence.py,sha256=Kz5DffeaHKKFO4tJ8JjoaUY3gGDzSXsUPuY756cf9gI,5611
pathway_subtyping/harmonize/uce.py,sha256=c77f5d-IRsq2_hFcdJfG5KbSYovudV90ZljFupRRFrs,5908
pathway_subtyping/knowledge_graph/__init__.py,sha256=sPZjaldsE_PpQqsAw0pEGcMR7xj6Da6K6RzeUoQvxwo,1883
pathway_subtyping/knowledge_graph/builder.py,sha256=1J-39fvLAnJyxmyUFckAw_OzyI6sLd2XjsV59Hon4_g,50680
pathway_subtyping/knowledge_graph/diff.py,sha256=qwd4MxOmQGdv3zzbi2UvMK0AuQxBvgN3nR3Ns-neHgg,6700
pathway_subtyping/knowledge_graph/exporters.py,sha256=L3FnWBi__w0DbvqmY_M8hvUO8z_c1YlC8liwfg_e4bs,14329
pathway_subtyping/knowledge_graph/regression.py,sha256=OnufNMrTlSEld2OEyfdNf51s-Qqa-hRnANJpJmQ-oL8,5278
pathway_subtyping/knowledge_graph/schema.py,sha256=S6UxQLd9hCACOOgzFcAms81q9H9155nUx_xgZIuVZPg,8027
pathway_subtyping/knowledge_graph/sources.py,sha256=3tqB5mOBqXGp2jcxNSpSJu_pyOH96jSIJzcOvtnEsRA,7335
pathway_subtyping/omics/__init__.py,sha256=9v4REF0ua7-G2GqjZqQEiLz3F9PNYquN9uC3gLnbrpA,1421
pathway_subtyping/omics/atac.py,sha256=XJ8jq406PLYfyvGiOX53zCNAGQo-DUaFs-jkK-COTZA,5071
pathway_subtyping/omics/discordance.py,sha256=VcURCAMEwPyrgqMPr4QtBQfkPxNGZgXPIvH_ogRsJKE,4826
pathway_subtyping/omics/fusion.py,sha256=36DTcJj42b0ybw3s9Tgf3QA59ezBFJ-enFXsmwwGgJE,9260
pathway_subtyping/omics/proteomics.py,sha256=fYVo49YZAJBkUvADgWv5cozB_Y_wT6T31o2e_0TnvZQ,3607
pathway_subtyping/perturb/__init__.py,sha256=-jWF5AeVSuociF1fsAep3nNxva8hrlZ8e00lyAPYo3U,1700
pathway_subtyping/perturb/geneformer_wrapper.py,sha256=ItoIYLKnkqNACfhvU1phV64G0Jn3GqsmcGq4bkm2aY0,22242
pathway_subtyping/perturb/msv_from_embedding.py,sha256=QUXf0ukWB7X-UazpFO3eS1pVVKiso9UtyTY84yXtIMo,4137
pathway_subtyping/perturb/report.py,sha256=Re90BFiiblVfTWs09dbGBuDeNerwi0vVjNuFiKIIaxQ,6406
pathway_subtyping/perturb/screen.py,sha256=_4mprLF3dhA3kFQq3-V6bHsuG40RGBDvBDZ2cggfOfo,5641
pathway_subtyping/qc/__init__.py,sha256=tE1-4N9fsCjVAOe74R0lgRuEJhEWckaa1OZSNY99t4k,4165
pathway_subtyping/qc/alphamissense.py,sha256=-wMvyLKgDseCdQq6mGunq7j5pc-h-L_ciiIF6BFoD1I,6707
pathway_subtyping/qc/atlas.py,sha256=bY633f0VXnXvimm-FsmbuAuWqX8kcvBtn9GClx5VuW8,11224
pathway_subtyping/qc/cascade.py,sha256=AvUPL5OsC3K4JSlFXLWhouRqm7ZQ_xjxFyYutXP5KEw,11706
pathway_subtyping/qc/crosstalk.py,sha256=LluQ8NkMfLjPLJXLdEw93-cizffTkDlkTAYwRh7cYlE,9124
pathway_subtyping/qc/dosage.py,sha256=ODllY5ezxsfO6y22ZOFsCRfi0bmUH4lSqN-VOxEPi2M,9048
pathway_subtyping/qc/drift.py,sha256=JYESZHO8OAyGc15T7uvBjurhFtGtvOGYH7Ht3cbhhPg,6104
pathway_subtyping/qc/feedback.py,sha256=mpazKsnJmsdfjWSQ2AJs-J-q-JsBKLD4CnWj7mvBkp4,5909
pathway_subtyping/qc/gates.py,sha256=mtaEdKC_2dTb7AJsPV7p26njkIUvgukU4IcJXIotQnk,6955
pathway_subtyping/qc/heterogeneity.py,sha256=5DbUU0FIPlIgtjYxzVDt-5DC4QsKCApwDhMWAWp9tX8,8792
pathway_subtyping/qc/offtarget.py,sha256=vBrzRynI4peygsMdXPVxhW43G1f5GBjDLBButvayibo,7903
pathway_subtyping/qc/offtarget_sequence.py,sha256=-APB8CpMU2Uq8l9ZAJ0HC1GXqxm59z5o4n71EDuLOHw,10661
pathway_subtyping/qc/stress.py,sha256=BSHWO926ClzKc0isuKWaGw9bZJ4HOi3joBHadMRZ7c0,7391
pathway_subtyping/qc/temporal.py,sha256=T3QgxAOMM3s3JGLzVEX4ynjzEqNu8g3vxVqBYHUoaIw,8855
pathway_subtyping/qc/tension.py,sha256=2tMORMYXhS_QLgJgA6Tg8bnEM9IH5tjyiUoQK0PR5AQ,6296
pathway_subtyping/qc/testing/__init__.py,sha256=mx6V771FGcEbD9nF2fI92qYwQGK8SVT941L75PvKKK4,552
pathway_subtyping/qc/testing/orthogonality.py,sha256=1IHKIeHvmF3xHgHBL1SeTTpmnexktu5agK9xV1fhjpg,9870
pathway_subtyping/qc/testing/severity_titration.py,sha256=RsFoM9wAiEimnIjlijKOLOyfFI9TM-lWSGewx6nZ-7c,6343
pathway_subtyping/qc/testing/simulator.py,sha256=CbVOL87k0DENgurWAEPpb31P6U-CqdEI1CyZntWgr88,38561
pathway_subtyping/qc/testing/fixtures/cart_spec.yaml,sha256=ED2NaJsDBOY4dyp9c0pWyTSQ7SUCg6Sxt4fT1-5ywO8,1736
pathway_subtyping/qc/testing/fixtures/feedback_loops.yaml,sha256=av9AMVYIHVRPruASYsLGzZDe66F3-2Frk9jORxNVwpE,2619
pathway_subtyping/qc/testing/fixtures/healthy_batch_spec.yaml,sha256=iNt8QfCIA9qft6E0dW0FRYjf17M_vSU2IfjWNJyP4-g,782
pathway_subtyping/qc/testing/fixtures/stress_signatures.yaml,sha256=dApeUD1YCZOkECdO5KyhYnkpozFOGTYuFoEyl-O-Yz4,2122
pathway_subtyping/qc/testing/fixtures/therapeutic_windows.yaml,sha256=Sme2_BPUOj31NfHCHPOGSaLh1vxN5NT52Ldf8LTOzVg,1876
pathway_subtyping/qc/testing/prospective/__init__.py,sha256=ufV7taCwrSivyghrWvo4hRafNoP89YC5iB8ttHqrQ00,69
pathway_subtyping/qc/testing/retrospective/__init__.py,sha256=777bLRj8vLTlEsv4FUCrCJLz3mv_-gTmXCy_viwD8nU,80
pathway_subtyping/qc/testing/scenarios/__init__.py,sha256=dtptfdipszwmUtMSL1CXVChh9pDIl_ZYT-FXAZ6wjOs,238
pathway_subtyping/qc/testing/scenarios/base.py,sha256=y9K51LWEeJl-obLx-GhxTeLhHuinucHYBMtcFw4ymuk,4485
pathway_subtyping/qc/testing/scenarios/cart_manufacturing.py,sha256=agRxfi-iW_BJu-szMxSz1rjcptNM_ef3Sbqel4RGNRI,2594
pathway_subtyping/qc/testing/scenarios/passage_stability.py,sha256=hWUsUjvH0w0Lk5gqCjVJNuNc4RMlM3NapmCq8R2pDFY,3374
pathway_subtyping/qc/testing/scenarios/report_validator.py,sha256=tEK8epjebjy67SI0LerHAytMxknThPBbsCfU1ko4J9o,3879
pathway_subtyping/uncertainty/__init__.py,sha256=3g3JpG18OjsSWMzHKxOCtEkfphq_apoQ42iTChKqJBw,1326
pathway_subtyping/uncertainty/bayesian_pathway.py,sha256=MJW-nn6X0FrpeZpanHflFZIZ6tc4xHUVVkKBs_dgz30,9685
pathway_subtyping/uncertainty/bootstrap.py,sha256=n-_NywT-bNlNHyjr1HKDtKIRGfBkJZCHR0bgddapRWQ,10089
pathway_subtyping/uncertainty/calibration.py,sha256=0oWB8WoO81io_fSZgDpQZ2sGEcSXcPLLkPj0crnCWVw,8308
pathway_subtyping/uncertainty/conformal.py,sha256=SLq6CuM8fXS2LgnvZbY4uoN6umUngXeSfF6bcvJ7rxU,9709
pathway_subtyping/utils/__init__.py,sha256=AAbRxC2EGHPacVf8eSAeC2aY73Ny5B1AB1sZFaaLzvo,513
pathway_subtyping/utils/metrics.py,sha256=ttwTsankgsHirWzGIWi0R2uisNfRIUHp-t8ZxUHE7Q4,5226
pathway_subtyping/utils/performance.py,sha256=7Ci7YFucz-wKLy_rVznbUWR_uWylE7IqtCFQ-Dv3GG8,15248
pathway_subtyping/utils/seed.py,sha256=ozW7ZNr2fb6BvOfghrTyTVlT6Mt1xT-ZiJoDmub0aWA,1490
pathway_subtyping-0.9.0.dist-info/licenses/LICENSE,sha256=HGNHShARcqwsH1qOrFnv3HDCqrv6csIjnncz8lfanLg,1070
pathway_subtyping-0.9.0.dist-info/METADATA,sha256=nEaq7EkUUsqMxzaw_0RyViMVtFQiXLgfaXWVTKnlPv4,31008
pathway_subtyping-0.9.0.dist-info/WHEEL,sha256=K260EYznzXsJYBQGqmI8VTxEdiZYNvDZwW9cBh9-_MA,91
pathway_subtyping-0.9.0.dist-info/entry_points.txt,sha256=vx5on_lutq5qipLHjpVHXWLoKYbfapTdFwTXYqkHFLQ,98
pathway_subtyping-0.9.0.dist-info/top_level.txt,sha256=7_qg2GIZ0azOLnKuMh0yfszhyrPHtuvVJ2mdgtIQ5mo,18
pathway_subtyping-0.9.0.dist-info/RECORD,,
