LICENSE
MANIFEST.in
README.md
criteria.csv
pyproject.toml
setup.py
speccheck/__init__.py
speccheck/cli.py
speccheck/collect.py
speccheck/criteria.py
speccheck/main.py
speccheck/report.py
speccheck/update_criteria.py
speccheck/util.py
speccheck/modules/__init__.py
speccheck/modules/ariba.py
speccheck/modules/checkm.py
speccheck/modules/depth.py
speccheck/modules/quast.py
speccheck/modules/speciator.py
speccheck/modules/sylph.py
speccheck/plot_modules/plot_ariba.py
speccheck/plot_modules/plot_checkm.py
speccheck/plot_modules/plot_quast.py
speccheck/plot_modules/plot_speciator.py
speccheck/plot_modules/plot_sylph.py
templates/bulma.css
templates/report.html
tests/test_collect.py
tests/test_collect_full.py
tests/test_dual_csv_output.py
tests/test_get_species_field.py
tests/test_module_ariba.py
tests/test_module_checkm.py
tests/test_module_quast.py
tests/test_module_speciator.py
tests/test_module_sylph.py
tests/test_report.py
tests/test_summary_full.py
tests/test_sylph_genomes_transform.py