LICENSE
README.md
pyproject.toml
p_brain.egg-info/PKG-INFO
p_brain.egg-info/SOURCES.txt
p_brain.egg-info/dependency_links.txt
p_brain.egg-info/entry_points.txt
p_brain.egg-info/requires.txt
p_brain.egg-info/top_level.txt
pbrain/__init__.py
pbrain/__main__.py
pbrain/_console.py
pbrain/_paths.py
pbrain/aggregation/__init__.py
pbrain/aggregation/base.py
pbrain/aggregation/median_curve.py
pbrain/aggregation/parcel.py
pbrain/aggregation/region.py
pbrain/aggregation/slice_wise.py
pbrain/aggregation/voxelwise.py
pbrain/aif/__init__.py
pbrain/aif/_backshift.py
pbrain/aif/base.py
pbrain/aif/cnn.py
pbrain/aif/cnn_sss_shifted.py
pbrain/aif/curve_file.py
pbrain/aif/deterministic.py
pbrain/aif/from_file.py
pbrain/aif/manual.py
pbrain/aif/ranker.py
pbrain/cli/__init__.py
pbrain/cli/__main__.py
pbrain/cli/_config_file.py
pbrain/cli/_deps.py
pbrain/cli/_fetch.py
pbrain/cli/_setup.py
pbrain/cli/cohort.py
pbrain/cli/run.py
pbrain/core/__init__.py
pbrain/core/config.py
pbrain/core/devices.py
pbrain/core/discovery.py
pbrain/core/logs.py
pbrain/core/manifest.py
pbrain/core/path_scheme.py
pbrain/core/pipeline.py
pbrain/core/plugin.py
pbrain/core/qc.py
pbrain/core/stage.py
pbrain/demo/__init__.py
pbrain/demo/__main__.py
pbrain/diagnostics/__init__.py
pbrain/diagnostics/_generic.py
pbrain/diagnostics/base.py
pbrain/diagnostics/conversion.py
pbrain/diagnostics/montage.py
pbrain/diagnostics/patlak.py
pbrain/diagnostics/tikhonov.py
pbrain/diagnostics/tikhonov_bayes.py
pbrain/diffusion/__init__.py
pbrain/diffusion/base.py
pbrain/diffusion/csd.py
pbrain/diffusion/dki.py
pbrain/diffusion/dki_micro.py
pbrain/diffusion/dti.py
pbrain/diffusion/fwdti.py
pbrain/diffusion/noddi.py
pbrain/diffusion/rsi.py
pbrain/diffusion/tractography.py
pbrain/io/__init__.py
pbrain/io/ir_assembly.py
pbrain/io/subject_discovery.py
pbrain/io/loaders/__init__.py
pbrain/io/loaders/base.py
pbrain/io/loaders/dicom.py
pbrain/io/loaders/dwi.py
pbrain/io/loaders/nifti.py
pbrain/io/loaders/parrec.py
pbrain/io/path_schemes/__init__.py
pbrain/io/path_schemes/base.py
pbrain/io/path_schemes/bids_like.py
pbrain/io/path_schemes/legacy.py
pbrain/models/__init__.py
pbrain/models/_baseline_shift.py
pbrain/models/_patlak_tools.py
pbrain/models/base.py
pbrain/models/extended_tofts.py
pbrain/models/patlak.py
pbrain/models/patlak_legacy.py
pbrain/models/tikhonov.py
pbrain/models/tikhonov_bayes.py
pbrain/models/tikhonov_legacy.py
pbrain/normalisation/__init__.py
pbrain/normalisation/base.py
pbrain/normalisation/baseline_p95.py
pbrain/normalisation/identity.py
pbrain/normalisation/legacy_shift.py
pbrain/signal_to_conc/__init__.py
pbrain/signal_to_conc/base.py
pbrain/signal_to_conc/baseline.py
pbrain/signal_to_conc/saturation_recovery.py
pbrain/signal_to_conc/spgr.py
pbrain/signal_to_conc/vfa_spgr.py
pbrain/stages/__init__.py
pbrain/stages/_builtin.py
pbrain/stages/_diagnostics.py
pbrain/t1_m0/__init__.py
pbrain/t1_m0/base.py
pbrain/t1_m0/inversion_recovery.py
pbrain/t1_m0/preloaded.py
pbrain/t1_m0/vfa_spgr.py
pbrain/tissue_roi/__init__.py
pbrain/tissue_roi/base.py
pbrain/tissue_roi/command.py
pbrain/tissue_roi/fastsurfer.py
pbrain/tissue_roi/manual.py
pbrain/tissue_roi/preloaded.py
pbrain/tissue_roi/synthseg.py
pbrain/tissue_roi/voxelwise.py
tests/test_pbrain_aggregation.py
tests/test_pbrain_aif.py
tests/test_pbrain_cnr_qc.py
tests/test_pbrain_contracts.py
tests/test_pbrain_loaders.py
tests/test_pbrain_models_parity.py
tests/test_pbrain_normalisation.py
tests/test_pbrain_path_schemes.py
tests/test_pbrain_patlak_vectorised.py
tests/test_pbrain_signal_to_conc.py
tests/test_pbrain_stages_qc.py
tests/test_pbrain_t1m0.py
tests/test_pbrain_tractography.py