LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
mappluspy.egg-info/PKG-INFO
mappluspy.egg-info/SOURCES.txt
mappluspy.egg-info/dependency_links.txt
mappluspy.egg-info/not-zip-safe
mappluspy.egg-info/top_level.txt
python/README.md
python/cmappluspy.h
python/cmappluspy.pxd
python/mappluspy.cpp
python/mappluspy.pyx
python/mappluspy_globals.cpp
python/mm2plus.py
src/IntervalTree.h
src/align.c
src/bseq.c
src/bseq.h
src/esterr.c
src/example.c
src/format.c
src/hit.c
src/index.c
src/jump.c
src/kalloc.c
src/kalloc.h
src/kdq.h
src/ketopt.h
src/khash.h
src/krmq.h
src/kseq.h
src/ksort.h
src/ksw2.h
src/ksw2_dispatch.c
src/ksw2_extd2_avx.c
src/ksw2_extd2_avx.h
src/ksw2_extd2_sse.c
src/ksw2_exts2_sse.c
src/ksw2_extz2_sse.c
src/ksw2_ll_sse.c
src/kthread.c
src/kthread.h
src/kvec.h
src/lchain.c
src/main.c
src/map.c
src/minimap.h
src/misc.c
src/mmpriv.h
src/options.c
src/parallel_chaining_v2_22.h
src/parallel_sort.cpp
src/pe.c
src/sdust.c
src/sdust.h
src/seed.c
src/sketch.c
src/splitidx.c
sse2neon/emmintrin.h
tests/test_mappluspy.py