LICENSE
README.md
pyproject.toml
src/prism/__init__.py
src/prism/api.py
src/prism/dpo.py
src/prism/io_utils.py
src/prism/model.py
src/prism/multimodal_io.py
src/prism/tokenizer.py
src/prism/utils.py
src/prism/data/gene_vocabulary.json
src/prism_antibody.egg-info/PKG-INFO
src/prism_antibody.egg-info/SOURCES.txt
src/prism_antibody.egg-info/dependency_links.txt
src/prism_antibody.egg-info/requires.txt
src/prism_antibody.egg-info/top_level.txt
tests/test_api.py
tests/test_dpo.py
tests/test_forward.py
tests/test_generate.py
tests/test_input_ids_api.py
tests/test_paired_chains.py
tests/test_per_position_ppl.py
tests/test_pll.py
tests/test_pll_guided_sampler.py
tests/test_ppl_verification.py
tests/test_predict_germline.py
tests/test_preserve_case_pll.py
tests/test_region_conditioned_pll.py
tests/test_run_all_benchmarks.py
tests/test_score_mutations.py
tests/test_score_mutations_input_ids.py
tests/test_scoring_api_v04.py
tests/test_scoring_methods.py
tests/test_synthetic_ngl.py
tests/test_tokenizer.py
tests/test_v35_1.py
tests/test_v35_1b.py
tests/test_v35_1c_cli.py
tests/test_v37_coherence.py
tests/test_v37_divergence.py
tests/test_v37_shm.py
tests/test_v38_3class_origin.py
tests/test_v40_synth_auxiliary.py