LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
docs/API.rst
docs/Examples.rst
docs/Makefile
docs/conf.py
docs/docker_build.rst
docs/docker_quickstart.rst
docs/examples_overview.rst
docs/index.rst
docs/inference_cde_guide.rst
docs/inference_cde_mdn_basic.rst
docs/inference_examples.rst
docs/installation.rst
docs/models.rst
docs/publication.rst
docs/requirements.txt
docs/_static/Fig1.png
docs/_static/custom.css
docs/_static/vbi_flowchart.png
docs/_static/vbi_log.png
docs/examples/.gitattributes
docs/examples/damp_oscillator.ipynb
docs/examples/damp_oscillator_cde.ipynb
docs/examples/distributions.ipynb
docs/examples/ghb_sde_cupy.ipynb
docs/examples/helpers.py
docs/examples/intro.ipynb
docs/examples/intro_feature.ipynb
docs/examples/jansen_rit_sde_cpp.ipynb
docs/examples/jansen_rit_sde_cupy.ipynb
docs/examples/jansen_rit_sde_numba.ipynb
docs/examples/jansen_rit_sde_numba_cde.ipynb
docs/examples/mpr_sde_cpp.ipynb
docs/examples/mpr_sde_cupy.ipynb
docs/examples/mpr_sde_numba.ipynb
docs/examples/mpr_sde_numba_cde.ipynb
docs/examples/mpr_tvbk.ipynb
docs/examples/my_features.json
docs/examples/my_features.py
docs/examples/parameter_tables_cpp.py
docs/examples/parameter_tables_numba.py
docs/examples/plots.ipynb
docs/examples/rww_sde_numba.ipynb
docs/examples/rww_sde_pytorch.ipynb
docs/examples/rww_sde_torch_kong.ipynb
docs/examples/sl_sdde_numba.ipynb
docs/examples/vep_sde.ipynb
docs/examples/vep_sde_numba.ipynb
docs/examples/vep_sde_numba_cde.ipynb
docs/examples/vep_sde_numba_cde_84.ipynb
docs/examples/wilson_cowan_cupy.ipynb
docs/examples/wilson_cowan_sde_numba.ipynb
docs/examples/wilson_cowan_sde_numba_cde.ipynb
docs/examples/ww_full_sde_cupy.ipynb
docs/examples/ww_full_sde_numba.ipynb
docs/examples/ww_full_sde_numba_cde.ipynb
docs/examples/.ipynb_checkpoints/intro-checkpoint.ipynb
docs/examples/__pycache__/helpers.cpython-310.pyc
docs/examples/data/centers.txt
docs/examples/data/centres.txt
docs/examples/data/cortical.txt
docs/examples/data/tract_lengths.txt
docs/examples/data/weights.txt
docs/examples/data/weights1.txt
docs/examples/data/weights_68.txt
docs/examples/output/damp_oscillator_ts.jpeg
docs/examples/output/stat_vec.pt
docs/examples/output/theta.pt
docs/examples/sbi-logs/NPE_C/2025-03-24T17_33_52.754987/events.out.tfevents.1742834032.ziaee.319710.0
vbi/__init__.py
vbi/_version.py
vbi/cde.py
vbi/inference.py
vbi/optional_deps.py
vbi/plot.py
vbi/sbi_inference.py
vbi/utils.py
vbi.egg-info/PKG-INFO
vbi.egg-info/SOURCES.txt
vbi.egg-info/dependency_links.txt
vbi.egg-info/not-zip-safe
vbi.egg-info/requires.txt
vbi.egg-info/top_level.txt
vbi/dataset/__init__.py
vbi/dataset/connectivity_88.zip
vbi/dataset/connectivity_84/centers.txt
vbi/dataset/connectivity_84/centres.txt
vbi/dataset/connectivity_84/cortical.txt
vbi/dataset/connectivity_84/tract_lengths.txt
vbi/dataset/connectivity_84/weights.txt
vbi/dataset/connectivity_88/Aud_88.txt
vbi/dataset/connectivity_88/Bold.npz
vbi/dataset/connectivity_88/Labels.txt
vbi/dataset/connectivity_88/Region_labels.txt
vbi/dataset/connectivity_88/tract_lengths.txt
vbi/dataset/connectivity_88/weights.txt
vbi/feature_extraction/__init__.py
vbi/feature_extraction/calc_features.py
vbi/feature_extraction/features.json
vbi/feature_extraction/features.py
vbi/feature_extraction/features_settings.py
vbi/feature_extraction/features_utils.py
vbi/feature_extraction/infodynamics.jar
vbi/feature_extraction/utility.py
vbi/models/__init__.py
vbi/models/cpp/__init__.py
vbi/models/cpp/base.py
vbi/models/cpp/damp_oscillator.py
vbi/models/cpp/jansen_rit.py
vbi/models/cpp/km.py
vbi/models/cpp/mpr.py
vbi/models/cpp/vep.py
vbi/models/cpp/wc.py
vbi/models/cpp/_src/__init__.py
vbi/models/cpp/_src/_do.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/_jr_sdde.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/_jr_sde.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/_km_sde.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/_mpr_sde.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/_vep.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/_wc_ode.cpython-310-x86_64-linux-gnu.so
vbi/models/cpp/_src/bold.hpp
vbi/models/cpp/_src/do.hpp
vbi/models/cpp/_src/do.i
vbi/models/cpp/_src/do.py
vbi/models/cpp/_src/do_wrap.cxx
vbi/models/cpp/_src/jr_sdde.hpp
vbi/models/cpp/_src/jr_sdde.i
vbi/models/cpp/_src/jr_sdde.py
vbi/models/cpp/_src/jr_sdde_wrap.cxx
vbi/models/cpp/_src/jr_sde.hpp
vbi/models/cpp/_src/jr_sde.i
vbi/models/cpp/_src/jr_sde.py
vbi/models/cpp/_src/jr_sde_wrap.cxx
vbi/models/cpp/_src/km_sde.hpp
vbi/models/cpp/_src/km_sde.i
vbi/models/cpp/_src/km_sde.py
vbi/models/cpp/_src/km_sde_wrap.cxx
vbi/models/cpp/_src/makefile
vbi/models/cpp/_src/mpr_sde.hpp
vbi/models/cpp/_src/mpr_sde.i
vbi/models/cpp/_src/mpr_sde.py
vbi/models/cpp/_src/mpr_sde_wrap.cxx
vbi/models/cpp/_src/utility.hpp
vbi/models/cpp/_src/vep.hpp
vbi/models/cpp/_src/vep.i
vbi/models/cpp/_src/vep.py
vbi/models/cpp/_src/vep_wrap.cxx
vbi/models/cpp/_src/wc_ode.hpp
vbi/models/cpp/_src/wc_ode.i
vbi/models/cpp/_src/wc_ode.py
vbi/models/cpp/_src/wc_ode_wrap.cxx
vbi/models/cpp/_src/__pycache__/mpr_sde.cpython-310.pyc
vbi/models/cupy/__init__.py
vbi/models/cupy/base.py
vbi/models/cupy/bold.py
vbi/models/cupy/ghb.py
vbi/models/cupy/jansen_rit.py
vbi/models/cupy/km.py
vbi/models/cupy/mpr.py
vbi/models/cupy/mpr_modified_bold.py
vbi/models/cupy/utils.py
vbi/models/cupy/wilson_cowan.py
vbi/models/cupy/ww.py
vbi/models/jax/__init__.py
vbi/models/numba/__init__.py
vbi/models/numba/base.py
vbi/models/numba/bold.py
vbi/models/numba/damp_oscillator.py
vbi/models/numba/ghb.py
vbi/models/numba/jansen_rit.py
vbi/models/numba/mpr.py
vbi/models/numba/rww.py
vbi/models/numba/sl.py
vbi/models/numba/utils.py
vbi/models/numba/vep.py
vbi/models/numba/wilson_cowan.py
vbi/models/numba/ww.py
vbi/models/pytorch/__init__.py
vbi/models/pytorch/rww.py
vbi/models/pytorch/rww_sde_kong.py
vbi/models/pytorch/utils.py
vbi/models/pytorch/data/default_parameters.npz
vbi/models/pytorch/data/obs_kong0.npz
vbi/models/tvbk/__init__.py
vbi/models/tvbk/tvbk_wrapper.py
vbi/models/tvbk/utils.py
vbi/papers/__init__.py
vbi/tests/COVERAGE_README.md
vbi/tests/README.md
vbi/tests/__init__.py
vbi/tests/_test_mpr_nb.py
vbi/tests/coverage_checker.py
vbi/tests/pytest.ini
vbi/tests/quick_coverage.py
vbi/tests/run_tests.py
vbi/tests/test___init__.py
vbi/tests/test_base_model_interface.py
vbi/tests/test_boxuniform.py
vbi/tests/test_cde.py
vbi/tests/test_cde_estimation.py
vbi/tests/test_cupy_unified_api.py
vbi/tests/test_fc_averaging_logic.py
vbi/tests/test_fc_correlation_cost.py
vbi/tests/test_fc_perfect_match.py
vbi/tests/test_fcd_ks_cost.py
vbi/tests/test_features.py
vbi/tests/test_ghb_cupy.py
vbi/tests/test_jansen_rit_cpp.py
vbi/tests/test_mpr_cupy.py
vbi/tests/test_mpr_numba.py
vbi/tests/test_optional_imports.py
vbi/tests/test_plot.py
vbi/tests/test_rww.py
vbi/tests/test_sl.py
vbi/tests/test_suite.py
vbi/tests/test_utils.py
vbi/tests/test_vep_cpp.py