AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/developers.rst
docs/group_pipeline.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/math.rst
docs/readme.rst
docs/running.rst
docs/usage.rst
docs/utils.rst
docs/_static/eigenfunction_0_best_voxel.png
docs/_static/eigenfunction_0_signal_intensity.png
docs/_static/eigenfunction_2_importance_map.png
docs/_static/ml_confusion_matrix_LR_pc-1.png
docs/_static/rsa_analysis_instrument_group_pc-0.png
docs/_static/similarity_p1_u1_t1e-3_l0_6_nb100.png
docs/_static/similarity_p2_u0_sk100.png
docs/_static/summary_balanced_accuracy.png
src/__init__.py
src/Neuro_fPCA_fMRI.egg-info/PKG-INFO
src/Neuro_fPCA_fMRI.egg-info/SOURCES.txt
src/Neuro_fPCA_fMRI.egg-info/dependency_links.txt
src/Neuro_fPCA_fMRI.egg-info/entry_points.txt
src/Neuro_fPCA_fMRI.egg-info/top_level.txt
src/PCAGroupDiscrimination/__init__.py
src/PCAGroupDiscrimination/build_signals_from_files.py
src/PCAGroupDiscrimination/ml_analyzer.py
src/PCAGroupDiscrimination/ml_hyperparameters.json
src/PCAGroupDiscrimination/ml_tester.py
src/PCAGroupDiscrimination/nn_wrapper.py
src/PCAGroupDiscrimination/process_signals.py
src/PCAGroupDiscrimination/signal_aligner.py
src/PCAGroupDiscrimination/stat-bck.py
src/PCAGroupDiscrimination/stat.py
src/PCAGroupDiscrimination/test_pairs.json
src/PCAGroupDiscrimination/utils.py
src/PCAGroupDiscrimination/cli/__init__.py
src/PCAGroupDiscrimination/cli/fmri_fpca_pipeline.py
src/fPCA/__init__.py
src/fPCA/b_spline_bspline.py
src/fPCA/b_spline_skfda.py
src/fPCA/evaluate_lambda.py
src/fPCA/fpca.py
src/fPCA/gcv_solver.py
src/fPCA/lags_durations.py
src/fPCA/pc_similarity.py
src/fPCA/peaks_similarity.py
src/fPCA/preprocess.py
src/fPCA/represent_pc.py
src/fPCA/similarity.py
src/fPCA/utils.py
src/fPCA/cli/__init__.py
src/fPCA/cli/compare_pcs.py
src/fPCA/cli/convert_npz_format.py
src/fPCA/cli/downloaod_nii_file.py
src/fPCA/cli/find_best_lags.py
src/fPCA/cli/fpca_main.py
src/fPCA/cli/nifti_viewer.py
src/fPCA/cli/preprocess_multiple_files.sh
src/fPCA/cli/preprocess_multiple_files_temp.sh
src/fPCA/cli/preprocess_nii_file.py
src/fPCA/cli/run_compare_pcs_combinations.sh
src/fPCA/cli/run_parameter_combinations.sh
src/fPCA/cli/run_parameter_combinations_example.sh
src/fPCA/cli/run_parameter_combinations_powershell.ps1
src/fPCA/cli/run_parameter_combinations_powershell_example.ps1
src/fPCA/cli/statistics_outputs.py
tests/__init__.py
tests/test_compare_peaks.py
tests/test_fmri.py
tests/test_functional_pca.py
tests/test_gcv.py
tests/prepare_synthetic_test_files/create_mask.py
tests/prepare_synthetic_test_files/extract_voxels.py