.coveragerc
.gitignore
.readthedocs.yml
AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.txt
README.md
TODO.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
.devcontainer/devcontainer.json
.github/workflows/pypi.yml
config/cli/data/subjects.json
config/cli/data/transforms.json
config/cli/subjects/config.json
docs/Makefile
docs/authors.md
docs/changelog.md
docs/conf.py
docs/contributing.md
docs/index.md
docs/license.md
docs/readme.md
docs/requirements.txt
docs/_static/.gitignore
docs/figures/pairplot.png
docs/figures/tsne.png
notebooks/demo.ipynb
notebooks/serial_experiments.ipynb
scripts/make_data.sh
scripts/make_subjects.sh
src/cytodatagen/__init__.py
src/cytodatagen/dists.py
src/cytodatagen/markers.py
src/cytodatagen/populations.py
src/cytodatagen/registry.py
src/cytodatagen/subjects.py
src/cytodatagen/transforms.py
src/cytodatagen.egg-info/PKG-INFO
src/cytodatagen.egg-info/SOURCES.txt
src/cytodatagen.egg-info/dependency_links.txt
src/cytodatagen.egg-info/not-zip-safe
src/cytodatagen.egg-info/requires.txt
src/cytodatagen.egg-info/top_level.txt
src/cytodatagen/cli/__init__.py
src/cytodatagen/cli/data.py
src/cytodatagen/cli/subjects.py
src/cytodatagen/utils/adata.py
src/cytodatagen/utils/io.py
src/cytodatagen/utils/plotting.py
tests/conftest.py
tests/test_dist.py
tests/test_populations.py