Use a PDB file to build a minimum internal structure representation.
Warning
Only cares for atoms and their names; neither connectivity nor (partial) charges are deduced. Masses are guessed and set to 0 if unknown.
Signifies an error while reading a PDB file.
x.__init__(...) initializes x; see help(type(x)) for signature
Parse atom information from PDB file pdbfile.
Only reads the list of atoms.
This functions uses the Bio.PDB.PDBParser as used by MDAnalysis.coordinates.pdb.extensions.get_structure().
Returns: | MDAnalysis internal structure dict |
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See also
The structure dict is defined in MDAnalysis.topology.PSFParser.parse().