.gitignore
README.md
pyproject.toml
requirements.txt
.github/workflows/publish-pypi.yml
.github/workflows/publish-test-pypi.yml
.github/workflows/tests.yml
docs/CONSOLIDATION_SUMMARY.md
docs/DEPEDENCY_COMPATIBILITY.md
docs/PACKAGE_STRUCTURE.md
docs/PUBLISHING_CHECKLIST.md
docs/PUBLISHING_GUIDE.md
docs/Package_structure.md
docs/QUICK_START_PUBLISHING.md
src/velocity_kit.egg-info/PKG-INFO
src/velocity_kit.egg-info/SOURCES.txt
src/velocity_kit.egg-info/dependency_links.txt
src/velocity_kit.egg-info/entry_points.txt
src/velocity_kit.egg-info/requires.txt
src/velocity_kit.egg-info/top_level.txt
src/velocitykit/__init__.py
src/velocitykit/cli.py
src/velocitykit/core.py
src/velocitykit/scvelo_report.py
src/velocitykit/platforms/__init__.py
src/velocitykit/platforms/common.py
src/velocitykit/platforms/pipseq.py
src/velocitykit/platforms/tenx.py
test_data/README.md
test_data/make_pipseeker_test_data.py
test_data/test.loom
test_data/test_demo/exonic_raw/barcodes.tsv.gz
test_data/test_demo/exonic_raw/features.tsv.gz
test_data/test_demo/exonic_raw/matrix.mtx.gz
test_data/test_demo/total/barcodes.tsv.gz
test_data/test_demo/total/features.tsv.gz
test_data/test_demo/total/matrix.mtx.gz