LICENSE
MANIFEST.in
README.md
pyproject.toml
examples/cwl/README.md
examples/cwl/advanced_features.cwl
examples/cwl/job.yml
examples/cwl/workflow.cwl
examples/cwl/data/input_data.txt
examples/cwl/tools/analyze_data.cwl
examples/cwl/tools/generate_report.cwl
examples/cwl/tools/prepare_data.cwl
examples/dagman/README.md
examples/dagman/analyze_data.sub
examples/dagman/generate_report.sub
examples/dagman/prepare_data.sub
examples/nextflow/README.md
examples/nextflow/main.nf
examples/nextflow/nextflow.config
examples/nextflow/data/raw_data.txt
examples/nextflow/environments/python.yml
examples/nextflow/environments/r.yml
examples/nextflow/modules/analyze.nf
examples/nextflow/modules/prepare.nf
examples/nextflow/modules/report.nf
examples/snake/README.md
examples/snake/advanced/README.md
examples/snake/advanced/advanced.smk
examples/snake/advanced/checkpoint.smk
examples/snake/advanced/config.yaml
examples/snake/advanced/container_priority.smk
examples/snake/advanced/gpu.smk
examples/snake/advanced/localrules.smk
examples/snake/advanced/notebook.smk
examples/snake/advanced/retries.smk
examples/snake/advanced/run_block.smk
examples/snake/advanced/scatter_gather.smk
examples/snake/advanced/start.txt
examples/snake/basic/README.md
examples/snake/basic/linear.smk
examples/snake/basic/raw_data.txt
examples/snake/basic/resources.smk
examples/snake/basic/start.txt
examples/snake/basic/wildcards.smk
examples/snake/basic/raw/a.fq
examples/snake/basic/raw/b.fq
examples/snake/basic/raw/c.fq
examples/snake/data/README.md
examples/snake/data/a.fq
examples/snake/data/b.fq
examples/snake/data/c.fq
examples/snake/data/environment.yaml
examples/snake/error_handling/README.md
examples/snake/error_handling/circular_dep.smk
examples/snake/error_handling/empty.smk
examples/snake/error_handling/error.smk
examples/snake/error_handling/unsupported.smk
examples/snake/full_workflow/README.md
examples/snake/full_workflow/config.yaml
examples/snake/full_workflow/data_analysis.smk
examples/snake/full_workflow/data/raw_data.txt
examples/snake/full_workflow/envs/analysis.yaml
examples/snake/full_workflow/envs/r_env.yaml
examples/snake/full_workflow/scripts/analyze.py
examples/snake/full_workflow/scripts/compute_stats.py
examples/snake/full_workflow/scripts/create_plots.R
examples/snake/full_workflow/scripts/generate_report.py
examples/snake/full_workflow/scripts/intensive_analysis.py
examples/snake/full_workflow/scripts/quality_check.py
examples/snake/full_workflow/scripts/summarize.py
wf2wf/__init__.py
wf2wf/__main__.py
wf2wf/cli.py
wf2wf/config.py
wf2wf/core.py
wf2wf/environ.py
wf2wf/expression.py
wf2wf/loss.py
wf2wf/prompt.py
wf2wf/report.py
wf2wf/scatter.py
wf2wf/validate.py
wf2wf.egg-info/PKG-INFO
wf2wf.egg-info/SOURCES.txt
wf2wf.egg-info/dependency_links.txt
wf2wf.egg-info/entry_points.txt
wf2wf.egg-info/requires.txt
wf2wf.egg-info/top_level.txt
wf2wf/exporters/__init__.py
wf2wf/exporters/bco.py
wf2wf/exporters/cwl.py
wf2wf/exporters/dagman.py
wf2wf/exporters/galaxy.py
wf2wf/exporters/nextflow.py
wf2wf/exporters/snakemake.py
wf2wf/exporters/wdl.py
wf2wf/importers/__init__.py
wf2wf/importers/cwl.py
wf2wf/importers/dagman.py
wf2wf/importers/galaxy.py
wf2wf/importers/nextflow.py
wf2wf/importers/snakemake.py
wf2wf/importers/wdl.py
wf2wf/schemas/v0.1/loss.json
wf2wf/schemas/v0.1/wf.json