Batch Effect QC Report


Data Information

Basic Describe

· Number of samples in each Batch and Condition

· Variation Analysis (F Test) of Each Data

· K-S Test of Each Pair Batch

· Domain Variance Score

· Measures of confounding between Batch and Condition


· Distribution Visualization



Metric Score

Raw

· K Nearest Neighbor Batch Effects Test

· Local Inverse Simpson's Index

· K Nearest Neighbor Similarity



Visualization

· Sample

· Q-Q Cross Fit

· Q-Q Fit Norm & Histogram



Summary