LICENSE.md
README.md
pyproject.toml
AutoREACTER/__init__.py
AutoREACTER/cache.py
AutoREACTER/initialization.py
AutoREACTER/input_parser.py
AutoREACTER.egg-info/PKG-INFO
AutoREACTER.egg-info/SOURCES.txt
AutoREACTER.egg-info/dependency_links.txt
AutoREACTER.egg-info/requires.txt
AutoREACTER.egg-info/top_level.txt
AutoREACTER/detectors/__init__.py
AutoREACTER/detectors/detector.py
AutoREACTER/detectors/functional_groups_detector.py
AutoREACTER/detectors/functional_groups_library.py
AutoREACTER/detectors/non_monomer_detector.py
AutoREACTER/detectors/reaction_detector.py
AutoREACTER/detectors/reactions_library.py
AutoREACTER/reaction_preparation/__init__.py
AutoREACTER/reaction_preparation/build_reaction_system.py
AutoREACTER/reaction_preparation/lunar_client/REACTER_files_builder.py
AutoREACTER/reaction_preparation/lunar_client/__init__.py
AutoREACTER/reaction_preparation/lunar_client/config.py
AutoREACTER/reaction_preparation/lunar_client/ff_validator.py
AutoREACTER/reaction_preparation/lunar_client/locate_lunar.py
AutoREACTER/reaction_preparation/lunar_client/lunar_api_wrapper.py
AutoREACTER/reaction_preparation/lunar_client/modifiers_molecule_files.py
AutoREACTER/reaction_preparation/lunar_client/molecule_3d_preparation.py
AutoREACTER/reaction_preparation/lunar_client/template_builder.py
AutoREACTER/reaction_preparation/reaction_processor/__init__.py
AutoREACTER/reaction_preparation/reaction_processor/fragment_comparison.py
AutoREACTER/reaction_preparation/reaction_processor/prepare_reactions.py
AutoREACTER/reaction_preparation/reaction_processor/utils.py
AutoREACTER/reaction_preparation/reaction_processor/walker.py
AutoREACTER/reaction_template_builder/__init__.py
AutoREACTER/reaction_template_builder/lunar_client/__init__.py
AutoREACTER/reaction_template_builder/reaction_template_pipeline/__init__.py
AutoREACTER/sim_setup/__init__.py
AutoREACTER/sim_setup/simulation_setup.py
AutoREACTER/sim_setup/system_property_calculations.py
AutoREACTER/sim_setup/writers/__init__.py
AutoREACTER/sim_setup/writers/densification_writer.py
AutoREACTER/sim_setup/writers/lammps_settings.py
AutoREACTER/sim_setup/writers/post_eq_writer.py
AutoREACTER/sim_setup/writers/pre_eq_writer.py
AutoREACTER/sim_setup/writers/rxn_first_stage_writer.py
AutoREACTER/sim_setup/writers/rxn_second_stage_writer.py
AutoREACTER/sim_setup/writers/writer.py
docs/source/conf.py