.python-version
CHANGELOG.md
LICENCE
MANIFEST.in
README.md
mkdocs.yml
pixi.lock
pixi.toml
pyproject.toml
setup.py
uv.lock
docs/api.md
docs/benchmarks.md
docs/configuration.md
docs/development.md
docs/embeddings.md
docs/fine-tuning.md
docs/getting-started.md
docs/index.md
docs/migration.md
docs/references.md
docs/results.md
docs/tracking.md
docs/tutorials.md
docs/assets/encoder-overview.svg
docs/assets/xirt-logo.png
docs/assets/xirt-logo.svg
docs/assets/xirt-mark.svg
docs/assets/benchmarks/fine-tune-torch/ecoli-linear-predictions.png
docs/assets/benchmarks/fine-tune-torch/fa-cross-rmse.png
docs/assets/benchmarks/tf-torch/ecoli-predictions.png
docs/assets/benchmarks/tf-torch/fa-cross-rmse.png
docs/benchmarks/fine-tune-torch.md
docs/benchmarks/tf-torch.md
docs/examples/xirt-rp.yaml
docs/stylesheets/extra.css
examples/__init__.py
examples/fine_tune.py
examples/train_predict.py
examples/tutorial_data.py
examples/data/README.md
examples/data/crosslinks.csv
xirt/__init__.py
xirt/__main__.py
xirt/adapters.py
xirt/config.py
xirt/const.py
xirt/embeddings.py
xirt/features.py
xirt/predictor.py
xirt/processing.py
xirt/qc.py
xirt/sequences.py
xirt/tracking.py
xirt/training.py
xirt/xirtnet.py
xirt/data_pipelines/__init__.py
xirt/data_pipelines/benchmarks/__init__.py
xirt/data_pipelines/benchmarks/common.py
xirt/data_pipelines/benchmarks/dataset.py
xirt/data_pipelines/benchmarks/verify.py
xirt/data_pipelines/benchmarks/datasets/__init__.py
xirt/data_pipelines/benchmarks/datasets/source_coverage.py
xirt/data_pipelines/benchmarks/datasets/sources.py
xirt/data_pipelines/benchmarks/fine_tune_torch/__init__.py
xirt/data_pipelines/benchmarks/fine_tune_torch/pipeline.py
xirt/data_pipelines/benchmarks/tf_torch/__init__.py
xirt/data_pipelines/benchmarks/tf_torch/analyze_results.py
xirt/data_pipelines/benchmarks/tf_torch/archive.py
xirt_torch.egg-info/PKG-INFO
xirt_torch.egg-info/SOURCES.txt
xirt_torch.egg-info/dependency_links.txt
xirt_torch.egg-info/entry_points.txt
xirt_torch.egg-info/requires.txt
xirt_torch.egg-info/top_level.txt