torch<3,>=2.9
numpy<3,>=2
pandas<3,>=2.2
scipy>=1.14
scikit-learn>=1.6
biopython>=1.85
pyteomics>=4.7
pyyaml>=6
matplotlib>=3.9
seaborn<0.14,>=0.13
palettable>=3.3
statannotations>=0.7
pydantic<3,>=2.10
tqdm>=4.67
marimo>=0.25.1

[cpu]
torch<3,>=2.9

[cuda]
torch<3,>=2.9

[esm]

[esm:python_version == "3.12"]
esm<3.3,>=3.2.3

[experiments]
lion-pytorch

[tensorboard]
tensorboard

[tracking]
mlflow<4,>=3
