Index

A | C | G | I | L | P | R | S | W

A

assign() (in module pbxplore.assignment)
Atom (class in pbxplore.structure.structure)
AtomError

C

Chain (class in pbxplore.structure.structure)
ChainError
chains_from_files() (in module pbxplore.structure)
chains_from_trajectory() (in module pbxplore.structure)
compare() (in module pbxplore.analysis)
compute_freq_matrix() (in module pbxplore.analysis)
compute_neq() (in module pbxplore.analysis)
compute_score_by_position() (in module pbxplore.analysis)
count_matrix() (in module pbxplore.analysis)

G

get_phi_psi_angles() (pbxplore.structure.structure.Chain method)

I

InvalidBlockError

L

list_demo_files() (in module pbxplore.demo)
list_demo_files_absolute() (in module pbxplore.demo)
load_substitution_matrix() (in module pbxplore.PB)

P

pbxplore (module)
pbxplore.analysis (module)
pbxplore.assign() (in module pbxplore)
pbxplore.assignment (module)
pbxplore.chains_from_files() (in module pbxplore)
pbxplore.chains_from_trajectory() (in module pbxplore)
pbxplore.demo (module)
pbxplore.io (module)
pbxplore.PB (module)
pbxplore.structure (module)
PDB (class in pbxplore.structure.PDB)
plot_map() (in module pbxplore.analysis)
plot_neq() (in module pbxplore.analysis)

R

read_fasta() (in module pbxplore.io)
read_occurence_file() (in module pbxplore.analysis)
read_several_fasta() (in module pbxplore.io)

S

SizeError
substitution_score() (in module pbxplore.analysis)

W

write_count_matrix() (in module pbxplore.io)
write_fasta() (in module pbxplore.io)
write_fasta_entry() (in module pbxplore.io)
write_neq() (in module pbxplore.io)