pandas
pymupdf
requests
biopython
openai
python-dotenv
jinja2
setuptools
tenacity
boto3>=1.43.2

[dev]
build
bumpversion
coverage[toml]
pytest
pytest-cov
ruff
sphinx
sphinx_rtd_theme
sphinx-autoapi
myst_parser
jupyter
ipykernel
fuzzywuzzy
pytest-mock
cffconvert>=2.0.0
bump-my-version>=1.3.0
flaky>=3.8.1

[docs]
sphinx
sphinx_rtd_theme
sphinx-autoapi
myst_parser

[publishing]
build
twine
wheel
