numpy<2.5,~=2.0
pandas~=3.0
scipy~=1.13
statsmodels~=0.14
threadpoolctl~=3.6
tqdm~=4.60
bgen<1.10,~=1.7
pysam~=0.22
zarr~=3.1
numcodecs~=0.16
more-itertools~=10.0
bx-python~=0.13
genomic-config>=0.1.6
sortedcontainers~=2.4
gwas-sumstats-parser[frame,io]~=0.7.0

[dev]
bump2version>=1.0
cfin-pyaddons>=0.4.2b0
myst-parser>=4.0
nbsphinx>=0.9
nbsphinx-link>=1.3
numba>=0.60
pyplink~=1.3
pytest>=8.0
pytest-cov>=5.0
pytest-mock>=3.14
hypothesis>=6.100
ruff>=0.11
sphinx>=8.0
sphinx-argparse>=0.5
sphinx-book-theme>=1.1

[hpc]
cfin-hpc-tools==0.3.0b0
