.gitignore
LICENSE
MANIFEST.in
Makefile
Makefile_gcc11
README.md
requirements.txt
setup.py
.claude-plugin/marketplace.json
.claude-plugin/plugin.json
.claude/skills/mican-analysis/SKILL.md
.claude/skills/mican-analysis/evals/evals.json
.claude/skills/mican-analysis/references/code-examples.md
.claude/skills/mican-analysis/references/conformational-analysis.md
.claude/skills/mican-analysis/references/score-guide.md
.claude/skills/mican-analysis/references/symmetry-analysis.md
.claude/skills/mican-analysis/scripts/setup_env.py
.github/workflows/build_and_test.yml
pymican/__init__.py
pymican/main.py
pymican/parse_result.py
pymican.egg-info/PKG-INFO
pymican.egg-info/SOURCES.txt
pymican.egg-info/dependency_links.txt
pymican.egg-info/requires.txt
pymican.egg-info/top_level.txt
pymican/bin/mican_x86_64_linux
scripts/mican
src/C3score.c
src/Daliscore.c
src/Makefile
src/SPscore.c
src/TMscore.c
src/TMscore_mod.c
src/assign_sse.c
src/bstft.c
src/ca_alignment.c
src/calc_maxdist.c
src/chain_break_check.c
src/check.c
src/clustering_align.c
src/coord_definition.c
src/distmat.c
src/extend_termini.c
src/fsscanf.c
src/fsscanf.h
src/getopt.c
src/global_alignment.c
src/hres2trans.c
src/main.c
src/main.h
src/main_align.c
src/make_hash_table.c
src/make_pdbdat.c
src/mican.h
src/output.c
src/print_data.c
src/print_pdb.c
src/print_progress.c
src/read_pdb.c
src/resname2reschar.c
src/rmsd.c
src/score.c
src/search_hash.c
src/superposition.c
src/svd.c
src/utils.c
src/xyz2vec.c