CITATION.cff
LICENSE
MANIFEST.in
README.md
agent-capabilities.json
agent-capabilities.schema.json
agent-capabilities.v1.json
agent-capabilities.v1.schema.json
agent-reference-crispr.json
agent-tools.json
agent-tools.schema.json
codemeta.json
pyproject.toml
setup.py
docs/assay-evidence.json
extensions/codex/dotmatch-agent/SKILL.md
extensions/codex/dotmatch-agent/agents/openai.yaml
extensions/codex/dotmatch-agent/references/crispr.md
extensions/codex/dotmatch-agent/references/evidence-policy.md
extensions/codex/dotmatch-agent/references/perturb-seq.md
include/qdalign.h
include/qdmetal.h
python/assaycode/__init__.py
python/assaycode/cli.py
python/dotmatch/__init__.py
python/dotmatch/agent_tools.py
python/dotmatch/assayruntime.py
python/dotmatch/assayscript.py
python/dotmatch/assaysim.py
python/dotmatch/assayspec.py
python/dotmatch/assaywatch.py
python/dotmatch/calibration.py
python/dotmatch/calibration_io.py
python/dotmatch/cli.py
python/dotmatch/core.py
python/dotmatch/feature_matrix.py
python/dotmatch/multiqc.py
python/dotmatch/native.py
python/dotmatch/panel.py
python/dotmatch/tl.py
python/dotmatch.egg-info/PKG-INFO
python/dotmatch.egg-info/SOURCES.txt
python/dotmatch.egg-info/dependency_links.txt
python/dotmatch.egg-info/entry_points.txt
python/dotmatch.egg-info/requires.txt
python/dotmatch.egg-info/top_level.txt
python/dotmatch/data/agent-capabilities.json
python/dotmatch/data/agent-capabilities.schema.json
python/dotmatch/data/agent-tools.json
python/dotmatch/data/agent-tools.schema.json
python/dotmatch/data/codex-skill/SKILL.md
python/dotmatch/data/codex-skill/agents/openai.yaml
python/dotmatch/data/codex-skill/references/crispr.md
python/dotmatch/data/codex-skill/references/evidence-policy.md
python/dotmatch/data/codex-skill/references/perturb-seq.md
python/quickdna/__init__.py
python/quickdna/core.py
src/qda.c
src/qdalign.c
src/qdmetal.mm
src/qdmetal_stub.c