LICENSE
README.md
pyproject.toml
test/test_check_ref_match.py
test/test_msa.py
yunta/__init__.py
yunta/cli.py
yunta/interaction_utils.py
yunta/io.py
yunta/plots.py
yunta/screening.py
yunta/weights.py
yunta.egg-info/PKG-INFO
yunta.egg-info/SOURCES.txt
yunta.egg-info/dependency_links.txt
yunta.egg-info/entry_points.txt
yunta.egg-info/requires.txt
yunta.egg-info/top_level.txt
yunta/data/20250409_hpi.csv
yunta/data/20260516_hpi.csv
yunta/interactions/__init__.py
yunta/interactions/runner.py
yunta/interactions/scoring.py
yunta/interactions/af2/__init__.py
yunta/interactions/af2/modelling.py
yunta/interactions/af2/run.py
yunta/interactions/af2/scoring.py
yunta/interactions/af2/src_speedppi/alphafold/__init__.py
yunta/interactions/af2/src_speedppi/alphafold/confidence.py
yunta/interactions/af2/src_speedppi/alphafold/protein.py
yunta/interactions/af2/src_speedppi/alphafold/residue_constants.py
yunta/interactions/af2/src_speedppi/alphafold/common/__init__.py
yunta/interactions/af2/src_speedppi/alphafold/data/__init__.py
yunta/interactions/af2/src_speedppi/alphafold/data/foldonly.py
yunta/interactions/af2/src_speedppi/alphafold/data/mmcif_parsing.py
yunta/interactions/af2/src_speedppi/alphafold/data/msaonly.py
yunta/interactions/af2/src_speedppi/alphafold/data/pair_msas.py
yunta/interactions/af2/src_speedppi/alphafold/data/parsers.py
yunta/interactions/af2/src_speedppi/alphafold/data/pipeline.py
yunta/interactions/af2/src_speedppi/alphafold/data/templates.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/__init__.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/hhblits.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/hhsearch.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/hmmbuild.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/hmmsearch.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/jackhmmer.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/kalign.py
yunta/interactions/af2/src_speedppi/alphafold/data/tools/utils.py
yunta/interactions/af2/src_speedppi/alphafold/model/__init__.py
yunta/interactions/af2/src_speedppi/alphafold/model/all_atom.py
yunta/interactions/af2/src_speedppi/alphafold/model/all_atom_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/common_modules.py
yunta/interactions/af2/src_speedppi/alphafold/model/config.py
yunta/interactions/af2/src_speedppi/alphafold/model/data.py
yunta/interactions/af2/src_speedppi/alphafold/model/features.py
yunta/interactions/af2/src_speedppi/alphafold/model/folding.py
yunta/interactions/af2/src_speedppi/alphafold/model/layer_stack.py
yunta/interactions/af2/src_speedppi/alphafold/model/layer_stack_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/lddt.py
yunta/interactions/af2/src_speedppi/alphafold/model/lddt_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/mapping.py
yunta/interactions/af2/src_speedppi/alphafold/model/model.py
yunta/interactions/af2/src_speedppi/alphafold/model/modules.py
yunta/interactions/af2/src_speedppi/alphafold/model/prng.py
yunta/interactions/af2/src_speedppi/alphafold/model/prng_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/quat_affine.py
yunta/interactions/af2/src_speedppi/alphafold/model/quat_affine_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/r3.py
yunta/interactions/af2/src_speedppi/alphafold/model/utils.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/__init__.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/data_transforms.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/input_pipeline.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/protein_features.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/protein_features_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/proteins_dataset.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/shape_helpers.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/shape_helpers_test.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/shape_placeholders.py
yunta/interactions/af2/src_speedppi/alphafold/model/tf/utils.py
yunta/interactions/dca/__init__.py
yunta/interactions/dca/dca.py
yunta/interactions/dca/dca_torch.py
yunta/structs/__init__.py
yunta/structs/metrics.py
yunta/structs/msa.py
yunta/structs/pdb_structs.py