.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CHANGELOG.rst
CODE_OF_CONDUCT.md
LICENSE
README.md
environment.yml
pyproject.toml
setup.cfg
setup.py
stdvoidsim_example.ipynb
validation.py
.github/dependabot.yml
.github/mergify.yml
.github/ISSUE_TEMPLATE/bug-report-issue-template.md
.github/ISSUE_TEMPLATE/dfe-qc-issue-template.md
.github/ISSUE_TEMPLATE/feature-request-issue-template.md
.github/ISSUE_TEMPLATE/model-qc-issue-template.md
.github/ISSUE_TEMPLATE/new-species-issue-template.md
.github/ISSUE_TEMPLATE/species-qc-issue-template.md
.github/workflows/docs.yml
.github/workflows/pre-commit.yml
.github/workflows/publish-pypi.yml
.github/workflows/tests.yml
docs/Makefile
docs/api.rst
docs/catalog.rst
docs/changelogs.rst
docs/cli_arguments.rst
docs/conf.py
docs/development.rst
docs/docutils.conf
docs/examples.py
docs/index.rst
docs/installation.rst
docs/introduction.rst
docs/selection_example.py
docs/tutorial.rst
docs/_ext/speciescatalog.py
docs/_static/custom.css
docs/_static/do_not_delete
docs/_static/logo.png
docs/_static/tute-divergence.png
docs/_static/tute-sfs.png
docs/_static/tute-sweep.png
docs/_templates/do_not_delete
docs/_templates/footer.html
docs/parameter_tables/CthGre/DeepSlumber_1R28.csv
docs/parameter_tables/CthGre/RlyehRising_2P20.csv
docs/parameter_tables/DagHyd/HybridIntrogression_2M27.csv
docs/parameter_tables/DagHyd/InnsmouthDecline_1M27.csv
maintenance/__init__.py
maintenance/__main__.py
maintenance/annotation_maint.py
maintenance/ensembl.py
maintenance/liftOver.py
maintenance/liftOver_catalog.py
maintenance/liftOver_comeron2012.py
maintenance/main.py
maintenance/ncbi.py
requirements/development.txt
requirements/rtd-conda-environment.yml
requirements/CI/conda.txt
requirements/CI/requirements.txt
stdvoidsim/__init__.py
stdvoidsim/__main__.py
stdvoidsim/_version.py
stdvoidsim/annotations.py
stdvoidsim/cache.py
stdvoidsim/citations.py
stdvoidsim/cli.py
stdvoidsim/dfe.py
stdvoidsim/engines.py
stdvoidsim/genetic_maps.py
stdvoidsim/genomes.py
stdvoidsim/models.py
stdvoidsim/selection.py
stdvoidsim/slim_engine.py
stdvoidsim/species.py
stdvoidsim/utils.py
stdvoidsim/warning_categories.py
stdvoidsim.egg-info/PKG-INFO
stdvoidsim.egg-info/SOURCES.txt
stdvoidsim.egg-info/dependency_links.txt
stdvoidsim.egg-info/entry_points.txt
stdvoidsim.egg-info/not-zip-safe
stdvoidsim.egg-info/requires.txt
stdvoidsim.egg-info/top_level.txt
stdvoidsim/catalog/__init__.py
stdvoidsim/catalog/AzaPri/__init__.py
stdvoidsim/catalog/AzaPri/demographic_models.py
stdvoidsim/catalog/AzaPri/genome_data.py
stdvoidsim/catalog/AzaPri/species.py
stdvoidsim/catalog/BybWor/__init__.py
stdvoidsim/catalog/BybWor/demographic_models.py
stdvoidsim/catalog/BybWor/genome_data.py
stdvoidsim/catalog/BybWor/species.py
stdvoidsim/catalog/CatUlt/__init__.py
stdvoidsim/catalog/CatUlt/demographic_models.py
stdvoidsim/catalog/CatUlt/genome_data.py
stdvoidsim/catalog/CatUlt/species.py
stdvoidsim/catalog/ChaFau/__init__.py
stdvoidsim/catalog/ChaFau/demographic_models.py
stdvoidsim/catalog/ChaFau/genome_data.py
stdvoidsim/catalog/ChaFau/species.py
stdvoidsim/catalog/ColOos/__init__.py
stdvoidsim/catalog/ColOos/demographic_models.py
stdvoidsim/catalog/ColOos/genome_data.py
stdvoidsim/catalog/ColOos/species.py
stdvoidsim/catalog/CthGre/__init__.py
stdvoidsim/catalog/CthGre/demographic_models.py
stdvoidsim/catalog/CthGre/genome_data.py
stdvoidsim/catalog/CthGre/species.py
stdvoidsim/catalog/DagGod/__init__.py
stdvoidsim/catalog/DagGod/demographic_models.py
stdvoidsim/catalog/DagGod/genome_data.py
stdvoidsim/catalog/DagGod/species.py
stdvoidsim/catalog/DagHyd/__init__.py
stdvoidsim/catalog/DagHyd/demographic_models.py
stdvoidsim/catalog/DagHyd/genome_data.py
stdvoidsim/catalog/DagHyd/species.py
stdvoidsim/catalog/DarYou/__init__.py
stdvoidsim/catalog/DarYou/demographic_models.py
stdvoidsim/catalog/DarYou/genome_data.py
stdvoidsim/catalog/DarYou/species.py
stdvoidsim/catalog/DhoGno/__init__.py
stdvoidsim/catalog/DhoGno/demographic_models.py
stdvoidsim/catalog/DhoGno/genome_data.py
stdvoidsim/catalog/DhoGno/species.py
stdvoidsim/catalog/DimSha/__init__.py
stdvoidsim/catalog/DimSha/demographic_models.py
stdvoidsim/catalog/DimSha/genome_data.py
stdvoidsim/catalog/DimSha/species.py
stdvoidsim/catalog/EldThi/__init__.py
stdvoidsim/catalog/EldThi/demographic_models.py
stdvoidsim/catalog/EldThi/genome_data.py
stdvoidsim/catalog/EldThi/species.py
stdvoidsim/catalog/FirVam/__init__.py
stdvoidsim/catalog/FirVam/demographic_models.py
stdvoidsim/catalog/FirVam/genome_data.py
stdvoidsim/catalog/FirVam/species.py
stdvoidsim/catalog/FlyPol/__init__.py
stdvoidsim/catalog/FlyPol/demographic_models.py
stdvoidsim/catalog/FlyPol/genome_data.py
stdvoidsim/catalog/FlyPol/species.py
stdvoidsim/catalog/ForSpa/__init__.py
stdvoidsim/catalog/ForSpa/demographic_models.py
stdvoidsim/catalog/ForSpa/genome_data.py
stdvoidsim/catalog/ForSpa/species.py
stdvoidsim/catalog/GhaShe/__init__.py
stdvoidsim/catalog/GhaShe/demographic_models.py
stdvoidsim/catalog/GhaShe/genome_data.py
stdvoidsim/catalog/GhaShe/species.py
stdvoidsim/catalog/GhoFee/__init__.py
stdvoidsim/catalog/GhoFee/demographic_models.py
stdvoidsim/catalog/GhoFee/genome_data.py
stdvoidsim/catalog/GhoFee/species.py
stdvoidsim/catalog/GnpKeh/__init__.py
stdvoidsim/catalog/GnpKeh/demographic_models.py
stdvoidsim/catalog/GnpKeh/genome_data.py
stdvoidsim/catalog/GnpKeh/species.py
stdvoidsim/catalog/GugsUn/__init__.py
stdvoidsim/catalog/GugsUn/demographic_models.py
stdvoidsim/catalog/GugsUn/genome_data.py
stdvoidsim/catalog/GugsUn/species.py
stdvoidsim/catalog/HasKin/__init__.py
stdvoidsim/catalog/HasKin/demographic_models.py
stdvoidsim/catalog/HasKin/genome_data.py
stdvoidsim/catalog/HasKin/species.py
stdvoidsim/catalog/HouFir/__init__.py
stdvoidsim/catalog/HouFir/demographic_models.py
stdvoidsim/catalog/HouFir/genome_data.py
stdvoidsim/catalog/HouFir/species.py
stdvoidsim/catalog/HunTin/__init__.py
stdvoidsim/catalog/HunTin/demographic_models.py
stdvoidsim/catalog/HunTin/genome_data.py
stdvoidsim/catalog/HunTin/species.py
stdvoidsim/catalog/LenSpi/__init__.py
stdvoidsim/catalog/LenSpi/demographic_models.py
stdvoidsim/catalog/LenSpi/genome_data.py
stdvoidsim/catalog/LenSpi/species.py
stdvoidsim/catalog/MiGFun/__init__.py
stdvoidsim/catalog/MiGFun/demographic_models.py
stdvoidsim/catalog/MiGFun/genome_data.py
stdvoidsim/catalog/MiGFun/species.py
stdvoidsim/catalog/MooFun/__init__.py
stdvoidsim/catalog/MooFun/demographic_models.py
stdvoidsim/catalog/MooFun/genome_data.py
stdvoidsim/catalog/MooFun/species.py
stdvoidsim/catalog/NigMan/__init__.py
stdvoidsim/catalog/NigMan/demographic_models.py
stdvoidsim/catalog/NigMan/genome_data.py
stdvoidsim/catalog/NigMan/species.py
stdvoidsim/catalog/NyaAza/__init__.py
stdvoidsim/catalog/NyaAza/demographic_models.py
stdvoidsim/catalog/NyaAza/genome_data.py
stdvoidsim/catalog/NyaAza/species.py
stdvoidsim/catalog/RatThi/__init__.py
stdvoidsim/catalog/RatThi/demographic_models.py
stdvoidsim/catalog/RatThi/genome_data.py
stdvoidsim/catalog/RatThi/species.py
stdvoidsim/catalog/SanDre/__init__.py
stdvoidsim/catalog/SanDre/demographic_models.py
stdvoidsim/catalog/SanDre/genome_data.py
stdvoidsim/catalog/SanDre/species.py
stdvoidsim/catalog/SanDwl/__init__.py
stdvoidsim/catalog/SanDwl/demographic_models.py
stdvoidsim/catalog/SanDwl/genome_data.py
stdvoidsim/catalog/SanDwl/species.py
stdvoidsim/catalog/SerHum/__init__.py
stdvoidsim/catalog/SerHum/demographic_models.py
stdvoidsim/catalog/SerHum/genome_data.py
stdvoidsim/catalog/SerHum/species.py
stdvoidsim/catalog/ShbNig/__init__.py
stdvoidsim/catalog/ShbNig/demographic_models.py
stdvoidsim/catalog/ShbNig/genome_data.py
stdvoidsim/catalog/ShbNig/species.py
stdvoidsim/catalog/ShoNig/__init__.py
stdvoidsim/catalog/ShoNig/demographic_models.py
stdvoidsim/catalog/ShoNig/genome_data.py
stdvoidsim/catalog/ShoNig/species.py
stdvoidsim/catalog/StarSp/__init__.py
stdvoidsim/catalog/StarSp/demographic_models.py
stdvoidsim/catalog/StarSp/genome_data.py
stdvoidsim/catalog/StarSp/species.py
stdvoidsim/catalog/TsaCho/__init__.py
stdvoidsim/catalog/TsaCho/demographic_models.py
stdvoidsim/catalog/TsaCho/genome_data.py
stdvoidsim/catalog/TsaCho/species.py
stdvoidsim/catalog/TsaGod/__init__.py
stdvoidsim/catalog/TsaGod/demographic_models.py
stdvoidsim/catalog/TsaGod/genome_data.py
stdvoidsim/catalog/TsaGod/species.py
stdvoidsim/catalog/WamUnd/__init__.py
stdvoidsim/catalog/WamUnd/demographic_models.py
stdvoidsim/catalog/WamUnd/genome_data.py
stdvoidsim/catalog/WamUnd/species.py
stdvoidsim/catalog/YitGre/__init__.py
stdvoidsim/catalog/YitGre/demographic_models.py
stdvoidsim/catalog/YitGre/genome_data.py
stdvoidsim/catalog/YitGre/species.py
stdvoidsim/catalog/YogSot/__init__.py
stdvoidsim/catalog/YogSot/demographic_models.py
stdvoidsim/catalog/YogSot/genome_data.py
stdvoidsim/catalog/YogSot/species.py
stdvoidsim/catalog/ZooGul/__init__.py
stdvoidsim/catalog/ZooGul/demographic_models.py
stdvoidsim/catalog/ZooGul/genome_data.py
stdvoidsim/catalog/ZooGul/species.py
stdvoidsim/qc/__init__.py
tests/__init__.py
tests/conftest.py
tests/test_AedAeg.py
tests/test_AnaPla.py
tests/test_AnoCar.py
tests/test_AnoGam.py
tests/test_ApiMel.py
tests/test_AraTha.py
tests/test_BosTau.py
tests/test_CaeEle.py
tests/test_CanFam.py
tests/test_ChlRei.py
tests/test_DroMel.py
tests/test_DroSec.py
tests/test_EscCol.py
tests/test_GasAcu.py
tests/test_GorGor.py
tests/test_HelAnn.py
tests/test_HelMel.py
tests/test_HomSap.py
tests/test_MusMus.py
tests/test_OrySat.py
tests/test_PanTro.py
tests/test_PapAnu.py
tests/test_PhoSin.py
tests/test_PonAbe.py
tests/test_RatNor.py
tests/test_StrAga.py
tests/test_SusScr.py
tests/test_annotations.py
tests/test_cache.py
tests/test_citations.py
tests/test_cli.py
tests/test_dfes.py
tests/test_engines.py
tests/test_genetic_maps.py
tests/test_genomes.py
tests/test_maintenance.py
tests/test_masking.py
tests/test_models.py
tests/test_slim_engine.py
tests/test_species.py
tests/test_utils.py