# Python-generated files
__pycache__/
*.py[oc]
build/
dist/
wheels/
*.egg-info

# Virtual environments
.venv

# Data files
*.h5ad
data/
__depr/

# Model cache and results
cached_models/
*.pt
*.pkl

# Logs
logs/

# IDE
.vscode/

# OS
.DS_Store

# Test outputs
tests/

# References
references/
.bak/
*.bak*
cache/
*.csv
*.log
reference/
*.json
*.npy
results
.env
tests/