LICENSE
README.md
pyproject.toml
setup.py
test/test_classification.py
test/test_cli.py
test/test_segmentation.py
test/data/__init__.py
test/data/test_dataset_wrapper.py
test/data/test_image_collection_dataset.py
test/data/test_raw_dataset.py
test/data/test_sampler.py
test/data/test_segmentation_dataset.py
test/data/test_tensor_dataset.py
test/loss/__init__.py
test/loss/test_cldice.py
test/loss/test_contrastive.py
test/loss/test_contrastive_impl.py
test/loss/test_dice.py
test/loss/test_loss_wrapper.py
test/loss/test_spoco.py
test/metric/__init__.py
test/metric/test_cldice.py
test/metric/test_metric.py
test/model/__init__.py
test/model/test_punet.py
test/model/test_resnet3d.py
test/model/test_torchvision_checkpoints.py
test/model/test_torchvision_unet.py
test/model/test_unet.py
test/model/test_unetr.py
test/self_training/__init__.py
test/self_training/test_fix_match.py
test/self_training/test_mean_teacher.py
test/trainer/__init__.py
test/trainer/test_default_trainer.py
test/trainer/test_spoco_trainer.py
test/transform/__init__.py
test/transform/test_augmentations.py
test/transform/test_generic.py
test/transform/test_invertible_augmentations.py
test/transform/test_label_transforms.py
test/transform/test_raw.py
test/util/__init__.py
test/util/test_imageio.py
test/util/test_memory.py
test/util/test_modelzoo.py
test/util/test_prediction.py
test/util/test_segmentation.py
test/util/test_util.py
torch_em/__init__.py
torch_em/__version__.py
torch_em/cli.py
torch_em/multi_gpu_training.py
torch_em/segmentation.py
torch_em.egg-info/PKG-INFO
torch_em.egg-info/SOURCES.txt
torch_em.egg-info/dependency_links.txt
torch_em.egg-info/entry_points.txt
torch_em.egg-info/requires.txt
torch_em.egg-info/top_level.txt
torch_em/classification/__init__.py
torch_em/classification/classification.py
torch_em/classification/classification_dataset.py
torch_em/classification/classification_logger.py
torch_em/classification/classification_trainer.py
torch_em/data/__init__.py
torch_em/data/concat_dataset.py
torch_em/data/dataset_wrapper.py
torch_em/data/image_collection_dataset.py
torch_em/data/pseudo_label_dataset.py
torch_em/data/raw_dataset.py
torch_em/data/raw_image_collection_dataset.py
torch_em/data/sampler.py
torch_em/data/segmentation_dataset.py
torch_em/data/tensor_dataset.py
torch_em/data/datasets/__init__.py
torch_em/data/datasets/util.py
torch_em/data/datasets/electron_microscopy/__init__.py
torch_em/data/datasets/electron_microscopy/aimseg.py
torch_em/data/datasets/electron_microscopy/asem.py
torch_em/data/datasets/electron_microscopy/astih.py
torch_em/data/datasets/electron_microscopy/axondeepseg.py
torch_em/data/datasets/electron_microscopy/axonem.py
torch_em/data/datasets/electron_microscopy/betaseg.py
torch_em/data/datasets/electron_microscopy/cefa_hela.py
torch_em/data/datasets/electron_microscopy/cellmap.py
torch_em/data/datasets/electron_microscopy/cem.py
torch_em/data/datasets/electron_microscopy/cmito.py
torch_em/data/datasets/electron_microscopy/cortex_connectomics.py
torch_em/data/datasets/electron_microscopy/cremi.py
torch_em/data/datasets/electron_microscopy/deepcontact.py
torch_em/data/datasets/electron_microscopy/deepict.py
torch_em/data/datasets/electron_microscopy/densecell.py
torch_em/data/datasets/electron_microscopy/drg_axon_mito.py
torch_em/data/datasets/electron_microscopy/emneuron.py
torch_em/data/datasets/electron_microscopy/emps.py
torch_em/data/datasets/electron_microscopy/fafb.py
torch_em/data/datasets/electron_microscopy/fafb_nuclei.py
torch_em/data/datasets/electron_microscopy/fib25.py
torch_em/data/datasets/electron_microscopy/fluoem.py
torch_em/data/datasets/electron_microscopy/hela_mito.py
torch_em/data/datasets/electron_microscopy/hemibrain.py
torch_em/data/datasets/electron_microscopy/human_cortex_h01.py
torch_em/data/datasets/electron_microscopy/human_liver_em.py
torch_em/data/datasets/electron_microscopy/human_organoids.py
torch_em/data/datasets/electron_microscopy/hydra_vulgaris.py
torch_em/data/datasets/electron_microscopy/isbi2012.py
torch_em/data/datasets/electron_microscopy/janelia_nucleus.py
torch_em/data/datasets/electron_microscopy/kasthuri.py
torch_em/data/datasets/electron_microscopy/l4_dense_reconstruction.py
torch_em/data/datasets/electron_microscopy/lucchi.py
torch_em/data/datasets/electron_microscopy/malecns.py
torch_em/data/datasets/electron_microscopy/manc.py
torch_em/data/datasets/electron_microscopy/microns.py
torch_em/data/datasets/electron_microscopy/microns_nuclei.py
torch_em/data/datasets/electron_microscopy/mito_anf.py
torch_em/data/datasets/electron_microscopy/mito_segem.py
torch_em/data/datasets/electron_microscopy/mitoem.py
torch_em/data/datasets/electron_microscopy/mitoemv2.py
torch_em/data/datasets/electron_microscopy/mitonet_predicted_kidney.py
torch_em/data/datasets/electron_microscopy/mousecc.py
torch_em/data/datasets/electron_microscopy/neuromast_connectomics.py
torch_em/data/datasets/electron_microscopy/nisb.py
torch_em/data/datasets/electron_microscopy/npc1_mito.py
torch_em/data/datasets/electron_microscopy/nuc_mm.py
torch_em/data/datasets/electron_microscopy/openorganelle_lipid_droplet.py
torch_em/data/datasets/electron_microscopy/openorganelle_nucleus.py
torch_em/data/datasets/electron_microscopy/optic_lobe.py
torch_em/data/datasets/electron_microscopy/parlakgul_liver.py
torch_em/data/datasets/electron_microscopy/platynereis.py
torch_em/data/datasets/electron_microscopy/pombe_nucleus_mito.py
torch_em/data/datasets/electron_microscopy/popsicle.py
torch_em/data/datasets/electron_microscopy/probtem.py
torch_em/data/datasets/electron_microscopy/saber.py
torch_em/data/datasets/electron_microscopy/snemi.py
torch_em/data/datasets/electron_microscopy/sponge_em.py
torch_em/data/datasets/electron_microscopy/surface_morphometrics.py
torch_em/data/datasets/electron_microscopy/sxt_ins1e_mito.py
torch_em/data/datasets/electron_microscopy/synapseweb_hippocampus.py
torch_em/data/datasets/electron_microscopy/tnbc_mito.py
torch_em/data/datasets/electron_microscopy/tumor_spheroid_em.py
torch_em/data/datasets/electron_microscopy/uro_cell.py
torch_em/data/datasets/electron_microscopy/vnc.py
torch_em/data/datasets/electron_microscopy/waenet.py
torch_em/data/datasets/electron_microscopy/wafer4.py
torch_em/data/datasets/electron_microscopy/wildenberg.py
torch_em/data/datasets/electron_microscopy/zebrafinch.py
torch_em/data/datasets/histopathology/__init__.py
torch_em/data/datasets/histopathology/bcss.py
torch_em/data/datasets/histopathology/beetle.py
torch_em/data/datasets/histopathology/camelyon.py
torch_em/data/datasets/histopathology/catch.py
torch_em/data/datasets/histopathology/conic.py
torch_em/data/datasets/histopathology/consep.py
torch_em/data/datasets/histopathology/cpm.py
torch_em/data/datasets/histopathology/crc_epithelium.py
torch_em/data/datasets/histopathology/cryonuseg.py
torch_em/data/datasets/histopathology/cytodark0.py
torch_em/data/datasets/histopathology/cytonuke.py
torch_em/data/datasets/histopathology/dcsa_net.py
torch_em/data/datasets/histopathology/deepliif.py
torch_em/data/datasets/histopathology/derma_paseg.py
torch_em/data/datasets/histopathology/ecm_phenotyping.py
torch_em/data/datasets/histopathology/glas.py
torch_em/data/datasets/histopathology/gleason2019.py
torch_em/data/datasets/histopathology/glysac.py
torch_em/data/datasets/histopathology/hashi.py
torch_em/data/datasets/histopathology/hest.py
torch_em/data/datasets/histopathology/histo_miner.py
torch_em/data/datasets/histopathology/icc.py
torch_em/data/datasets/histopathology/ignite.py
torch_em/data/datasets/histopathology/imc_kidney.py
torch_em/data/datasets/histopathology/janowczyk.py
torch_em/data/datasets/histopathology/khoshdeli.py
torch_em/data/datasets/histopathology/liver_tme_mibi.py
torch_em/data/datasets/histopathology/lizard.py
torch_em/data/datasets/histopathology/lizard_mitosis.py
torch_em/data/datasets/histopathology/lynsec.py
torch_em/data/datasets/histopathology/monusac.py
torch_em/data/datasets/histopathology/monuseg.py
torch_em/data/datasets/histopathology/nuclick.py
torch_em/data/datasets/histopathology/nuinsseg.py
torch_em/data/datasets/histopathology/ocelot.py
torch_em/data/datasets/histopathology/orion_crc.py
torch_em/data/datasets/histopathology/pannuke.py
torch_em/data/datasets/histopathology/panoptils.py
torch_em/data/datasets/histopathology/pcns.py
torch_em/data/datasets/histopathology/peso.py
torch_em/data/datasets/histopathology/phenocell.py
torch_em/data/datasets/histopathology/precise.py
torch_em/data/datasets/histopathology/prostate_cnb.py
torch_em/data/datasets/histopathology/puma.py
torch_em/data/datasets/histopathology/rings.py
torch_em/data/datasets/histopathology/segpath.py
torch_em/data/datasets/histopathology/sinus.py
torch_em/data/datasets/histopathology/spatch.py
torch_em/data/datasets/histopathology/spatialproteomics_bnhl.py
torch_em/data/datasets/histopathology/srsanet.py
torch_em/data/datasets/histopathology/sthelar.py
torch_em/data/datasets/histopathology/tcga_tissue.py
torch_em/data/datasets/histopathology/tevg.py
torch_em/data/datasets/histopathology/tiger.py
torch_em/data/datasets/histopathology/tissueseg.py
torch_em/data/datasets/histopathology/tnbc.py
torch_em/data/datasets/histopathology/tnbc_celltype.py
torch_em/data/datasets/histopathology/tsakiroglou.py
torch_em/data/datasets/histopathology/wsss4luad.py
torch_em/data/datasets/light_microscopy/__init__.py
torch_em/data/datasets/light_microscopy/air_leish.py
torch_em/data/datasets/light_microscopy/aisegcell.py
torch_em/data/datasets/light_microscopy/alfi.py
torch_em/data/datasets/light_microscopy/apacs23.py
torch_em/data/datasets/light_microscopy/arvidsson.py
torch_em/data/datasets/light_microscopy/bac_mother.py
torch_em/data/datasets/light_microscopy/balf.py
torch_em/data/datasets/light_microscopy/bbbc010.py
torch_em/data/datasets/light_microscopy/bbbc024.py
torch_em/data/datasets/light_microscopy/bbbc027.py
torch_em/data/datasets/light_microscopy/bbbc030.py
torch_em/data/datasets/light_microscopy/bbbc032.py
torch_em/data/datasets/light_microscopy/bbbc033.py
torch_em/data/datasets/light_microscopy/bbbc034.py
torch_em/data/datasets/light_microscopy/bbbc046.py
torch_em/data/datasets/light_microscopy/bbbc050.py
torch_em/data/datasets/light_microscopy/bccd.py
torch_em/data/datasets/light_microscopy/bitdepth_nucseg.py
torch_em/data/datasets/light_microscopy/blastospim.py
torch_em/data/datasets/light_microscopy/bmgd.py
torch_em/data/datasets/light_microscopy/brain_organoids.py
torch_em/data/datasets/light_microscopy/brifiseg.py
torch_em/data/datasets/light_microscopy/cardioblast_nuclei.py
torch_em/data/datasets/light_microscopy/cartocell.py
torch_em/data/datasets/light_microscopy/ccagt.py
torch_em/data/datasets/light_microscopy/celegans_atlas.py
torch_em/data/datasets/light_microscopy/cell_acdc.py
torch_em/data/datasets/light_microscopy/cellapp.py
torch_em/data/datasets/light_microscopy/cellbindb.py
torch_em/data/datasets/light_microscopy/cellpose.py
torch_em/data/datasets/light_microscopy/cellseg_3d.py
torch_em/data/datasets/light_microscopy/cellular.py
torch_em/data/datasets/light_microscopy/cisd.py
torch_em/data/datasets/light_microscopy/covid_if.py
torch_em/data/datasets/light_microscopy/cshaper.py
torch_em/data/datasets/light_microscopy/ctc.py
torch_em/data/datasets/light_microscopy/cvz_fluo.py
torch_em/data/datasets/light_microscopy/dcis_com_nuclei.py
torch_em/data/datasets/light_microscopy/deepbacs.py
torch_em/data/datasets/light_microscopy/deepfucci.py
torch_em/data/datasets/light_microscopy/deepseas.py
torch_em/data/datasets/light_microscopy/dememseg.py
torch_em/data/datasets/light_microscopy/dic_hepg2.py
torch_em/data/datasets/light_microscopy/dsb.py
torch_em/data/datasets/light_microscopy/dynamicnuclearnet.py
torch_em/data/datasets/light_microscopy/e11bio.py
torch_em/data/datasets/light_microscopy/ecoli_microcolony_lineage.py
torch_em/data/datasets/light_microscopy/embedseg_data.py
torch_em/data/datasets/light_microscopy/enseg.py
torch_em/data/datasets/light_microscopy/epicure.py
torch_em/data/datasets/light_microscopy/evican.py
torch_em/data/datasets/light_microscopy/fl2net.py
torch_em/data/datasets/light_microscopy/fluo_neuronal_cells.py
torch_em/data/datasets/light_microscopy/flywing.py
torch_em/data/datasets/light_microscopy/fusionx.py
torch_em/data/datasets/light_microscopy/glioma_c6.py
torch_em/data/datasets/light_microscopy/goblet_cell.py
torch_em/data/datasets/light_microscopy/gonuclear.py
torch_em/data/datasets/light_microscopy/hela_cytonuc.py
torch_em/data/datasets/light_microscopy/hipsc_single_cell.py
torch_em/data/datasets/light_microscopy/hpa.py
torch_em/data/datasets/light_microscopy/idr0095.py
torch_em/data/datasets/light_microscopy/ifnuclei.py
torch_em/data/datasets/light_microscopy/isbi14.py
torch_em/data/datasets/light_microscopy/lapd_mouse.py
torch_em/data/datasets/light_microscopy/liconn.py
torch_em/data/datasets/light_microscopy/livecell.py
torch_em/data/datasets/light_microscopy/lpc_nucseg.py
torch_em/data/datasets/light_microscopy/lsm_mouse_embryo.py
torch_em/data/datasets/light_microscopy/lungvis.py
torch_em/data/datasets/light_microscopy/mcellseg.py
torch_em/data/datasets/light_microscopy/medussa.py
torch_em/data/datasets/light_microscopy/micro_bench.py
torch_em/data/datasets/light_microscopy/microbeseg.py
torch_em/data/datasets/light_microscopy/micronucml.py
torch_em/data/datasets/light_microscopy/mif_tonsil.py
torch_em/data/datasets/light_microscopy/mndino.py
torch_em/data/datasets/light_microscopy/morphonet.py
torch_em/data/datasets/light_microscopy/morphoseg.py
torch_em/data/datasets/light_microscopy/mouse_cortex_ios.py
torch_em/data/datasets/light_microscopy/mouse_embryo.py
torch_em/data/datasets/light_microscopy/mrose_bacteria.py
torch_em/data/datasets/light_microscopy/mucic.py
torch_em/data/datasets/light_microscopy/multiphoton_liver.py
torch_em/data/datasets/light_microscopy/murine_phase_contrast.py
torch_em/data/datasets/light_microscopy/myofuse.py
torch_em/data/datasets/light_microscopy/neisseria_meningitidis.py
torch_em/data/datasets/light_microscopy/neurips_cell_seg.py
torch_em/data/datasets/light_microscopy/neurons_3d_multispecies.py
torch_em/data/datasets/light_microscopy/neurosphere.py
torch_em/data/datasets/light_microscopy/nis3d.py
torch_em/data/datasets/light_microscopy/nisnet3d.py
torch_em/data/datasets/light_microscopy/nuc_morph.py
torch_em/data/datasets/light_microscopy/nuc_morph_timelapse.py
torch_em/data/datasets/light_microscopy/nucverse3d.py
torch_em/data/datasets/light_microscopy/omnipose.py
torch_em/data/datasets/light_microscopy/oocount.py
torch_em/data/datasets/light_microscopy/oocyteseg.py
torch_em/data/datasets/light_microscopy/orgaextractor.py
torch_em/data/datasets/light_microscopy/organoid.py
torch_em/data/datasets/light_microscopy/organoidnet.py
torch_em/data/datasets/light_microscopy/orgasegment.py
torch_em/data/datasets/light_microscopy/orgline.py
torch_em/data/datasets/light_microscopy/ovarian_reserve.py
torch_em/data/datasets/light_microscopy/pan_multiplex.py
torch_em/data/datasets/light_microscopy/parhyale_regen.py
torch_em/data/datasets/light_microscopy/pcmmd.py
torch_em/data/datasets/light_microscopy/phmamm.py
torch_em/data/datasets/light_microscopy/plantseg.py
torch_em/data/datasets/light_microscopy/pnas_arabidopsis.py
torch_em/data/datasets/light_microscopy/pyropia.py
torch_em/data/datasets/light_microscopy/revvity25.py
torch_em/data/datasets/light_microscopy/scaffold_a549.py
torch_em/data/datasets/light_microscopy/segpc.py
torch_em/data/datasets/light_microscopy/selma3d.py
torch_em/data/datasets/light_microscopy/slice2.py
torch_em/data/datasets/light_microscopy/slimia.py
torch_em/data/datasets/light_microscopy/sperm_scd.py
torch_em/data/datasets/light_microscopy/spheroids_hepg2.py
torch_em/data/datasets/light_microscopy/stomataquant.py
torch_em/data/datasets/light_microscopy/svia.py
torch_em/data/datasets/light_microscopy/synthmt.py
torch_em/data/datasets/light_microscopy/tissuenet.py
torch_em/data/datasets/light_microscopy/toiam.py
torch_em/data/datasets/light_microscopy/u20s.py
torch_em/data/datasets/light_microscopy/urinary_tract.py
torch_em/data/datasets/light_microscopy/usiigaci.py
torch_em/data/datasets/light_microscopy/vampire.py
torch_em/data/datasets/light_microscopy/vgg_hela.py
torch_em/data/datasets/light_microscopy/vibrio_cholerae.py
torch_em/data/datasets/light_microscopy/vicar.py
torch_em/data/datasets/light_microscopy/wing_disc.py
torch_em/data/datasets/light_microscopy/wing_disc_timelapse.py
torch_em/data/datasets/light_microscopy/xenium.py
torch_em/data/datasets/light_microscopy/xenium_lung_treg.py
torch_em/data/datasets/light_microscopy/xpress.py
torch_em/data/datasets/light_microscopy/yeastcellseg.py
torch_em/data/datasets/light_microscopy/yeastms.py
torch_em/data/datasets/light_microscopy/yeastsam.py
torch_em/data/datasets/light_microscopy/yeaz.py
torch_em/data/datasets/medical/__init__.py
torch_em/data/datasets/medical/abdomen_atlas.py
torch_em/data/datasets/medical/abdomen_atlas_3.py
torch_em/data/datasets/medical/abdomenct_1k.py
torch_em/data/datasets/medical/abus.py
torch_em/data/datasets/medical/acdc.py
torch_em/data/datasets/medical/acouslic_ai.py
torch_em/data/datasets/medical/acrin_6698.py
torch_em/data/datasets/medical/acrin_6698_dwi.py
torch_em/data/datasets/medical/acrin_hnscc.py
torch_em/data/datasets/medical/adrenal_acc.py
torch_em/data/datasets/medical/advanced_mri_breast_lesions.py
torch_em/data/datasets/medical/aeropath.py
torch_em/data/datasets/medical/afio.py
torch_em/data/datasets/medical/aidk.py
torch_em/data/datasets/medical/airrc.py
torch_em/data/datasets/medical/amd_dme_3d_oct.py
torch_em/data/datasets/medical/amd_sd.py
torch_em/data/datasets/medical/amos.py
torch_em/data/datasets/medical/aortaseg24.py
torch_em/data/datasets/medical/arcade.py
torch_em/data/datasets/medical/atlas_liver.py
torch_em/data/datasets/medical/atlas_stroke.py
torch_em/data/datasets/medical/atm22.py
torch_em/data/datasets/medical/atriaseg.py
torch_em/data/datasets/medical/autopet.py
torch_em/data/datasets/medical/autopet_organ.py
torch_em/data/datasets/medical/bagls.py
torch_em/data/datasets/medical/bagls_vf.py
torch_em/data/datasets/medical/beamster.py
torch_em/data/datasets/medical/bhsd.py
torch_em/data/datasets/medical/bkai_igh_neopolyp.py
torch_em/data/datasets/medical/bobs.py
torch_em/data/datasets/medical/bonbid_hie.py
torch_em/data/datasets/medical/bonedat.py
torch_em/data/datasets/medical/bpd_neo.py
torch_em/data/datasets/medical/brainmetshare.py
torch_em/data/datasets/medical/brainptm.py
torch_em/data/datasets/medical/bratious.py
torch_em/data/datasets/medical/brats.py
torch_em/data/datasets/medical/brats24.py
torch_em/data/datasets/medical/brisc.py
torch_em/data/datasets/medical/btcv.py
torch_em/data/datasets/medical/btxrd.py
torch_em/data/datasets/medical/bus_uclm.py
torch_em/data/datasets/medical/busbra.py
torch_em/data/datasets/medical/busi.py
torch_em/data/datasets/medical/c3ro.py
torch_em/data/datasets/medical/cadis.py
torch_em/data/datasets/medical/camus.py
torch_em/data/datasets/medical/cap_lv.py
torch_em/data/datasets/medical/cbis_ddsm.py
torch_em/data/datasets/medical/cc359.py
torch_em/data/datasets/medical/cc_tumor_heterogeneity.py
torch_em/data/datasets/medical/cesarean_scar_defect.py
torch_em/data/datasets/medical/cetus.py
torch_em/data/datasets/medical/chaksu.py
torch_em/data/datasets/medical/chaos.py
torch_em/data/datasets/medical/chase_db1.py
torch_em/data/datasets/medical/chest_xray_masks.py
torch_em/data/datasets/medical/chestx_det.py
torch_em/data/datasets/medical/cholec_instance_seg.py
torch_em/data/datasets/medical/cholecseg8k.py
torch_em/data/datasets/medical/cirrmri600.py
torch_em/data/datasets/medical/colonvessels.py
torch_em/data/datasets/medical/colorectal_liver_mets.py
torch_em/data/datasets/medical/coph100.py
torch_em/data/datasets/medical/corneal_confocal_nerve.py
torch_em/data/datasets/medical/couinaud.py
torch_em/data/datasets/medical/covid19_20.py
torch_em/data/datasets/medical/covid19_seg.py
torch_em/data/datasets/medical/covid_qu_ex.py
torch_em/data/datasets/medical/cptac_ccrcc_tumor.py
torch_em/data/datasets/medical/cptac_pda_tumor.py
torch_em/data/datasets/medical/cptac_ucec_tumor.py
torch_em/data/datasets/medical/crossmoda.py
torch_em/data/datasets/medical/crosspan.py
torch_em/data/datasets/medical/csc_fundus_segmentation.py
torch_em/data/datasets/medical/ct2us_kidney.py
torch_em/data/datasets/medical/ct_cadaiver.py
torch_em/data/datasets/medical/ct_lymph_nodes.py
torch_em/data/datasets/medical/ct_org.py
torch_em/data/datasets/medical/ctpelvic1k.py
torch_em/data/datasets/medical/ctrus.py
torch_em/data/datasets/medical/ctspine1k.py
torch_em/data/datasets/medical/ctspinopelvic1k.py
torch_em/data/datasets/medical/curious2022.py
torch_em/data/datasets/medical/curvas.py
torch_em/data/datasets/medical/cvc_colondb.py
torch_em/data/datasets/medical/cvc_endoscenestill.py
torch_em/data/datasets/medical/cyst_x.py
torch_em/data/datasets/medical/cystods.py
torch_em/data/datasets/medical/dap_atlas.py
torch_em/data/datasets/medical/dca1.py
torch_em/data/datasets/medical/ddti.py
torch_em/data/datasets/medical/deep_psma.py
torch_em/data/datasets/medical/deeplesion.py
torch_em/data/datasets/medical/deeprt.py
torch_em/data/datasets/medical/denpar.py
torch_em/data/datasets/medical/dentex.py
torch_em/data/datasets/medical/derma_octa.py
torch_em/data/datasets/medical/dprd.py
torch_em/data/datasets/medical/drishti_gs.py
torch_em/data/datasets/medical/drive.py
torch_em/data/datasets/medical/dsad.py
torch_em/data/datasets/medical/duke_liver.py
torch_em/data/datasets/medical/echonet_dynamic.py
torch_em/data/datasets/medical/echonet_pediatric.py
torch_em/data/datasets/medical/edd2020.py
torch_em/data/datasets/medical/emidec.py
torch_em/data/datasets/medical/endoscapes2023.py
torch_em/data/datasets/medical/enhance_pet.py
torch_em/data/datasets/medical/episurg.py
torch_em/data/datasets/medical/etis_larib.py
torch_em/data/datasets/medical/far_polyp_seg.py
torch_em/data/datasets/medical/fass.py
torch_em/data/datasets/medical/feta24.py
torch_em/data/datasets/medical/fetoplac.py
torch_em/data/datasets/medical/figshare_brain_tumor.py
torch_em/data/datasets/medical/fives.py
torch_em/data/datasets/medical/flare.py
torch_em/data/datasets/medical/focus.py
torch_em/data/datasets/medical/four_d_lung.py
torch_em/data/datasets/medical/fovea.py
torch_em/data/datasets/medical/fracatlas.py
torch_em/data/datasets/medical/fugc.py
torch_em/data/datasets/medical/full_head_mri_segmentation.py
torch_em/data/datasets/medical/fumpe.py
torch_em/data/datasets/medical/fundus_avseg.py
torch_em/data/datasets/medical/fuseg.py
torch_em/data/datasets/medical/gist514.py
torch_em/data/datasets/medical/han_seg.py
torch_em/data/datasets/medical/hc18.py
torch_em/data/datasets/medical/hcc_tace.py
torch_em/data/datasets/medical/hecktor.py
torch_em/data/datasets/medical/hil_toothseg.py
torch_em/data/datasets/medical/hipas.py
torch_em/data/datasets/medical/hippo_subfields.py
torch_em/data/datasets/medical/hist_seg.py
torch_em/data/datasets/medical/hntsmrg.py
torch_em/data/datasets/medical/hqcolon.py
torch_em/data/datasets/medical/hrf.py
torch_em/data/datasets/medical/hrf_seg_plus.py
torch_em/data/datasets/medical/hubmap_hpa.py
torch_em/data/datasets/medical/hubmap_kidney.py
torch_em/data/datasets/medical/hva_ct.py
torch_em/data/datasets/medical/hvdropdb.py
torch_em/data/datasets/medical/hvm.py
torch_em/data/datasets/medical/hvsmr.py
torch_em/data/datasets/medical/ibd_mre.py
torch_em/data/datasets/medical/idrid.py
torch_em/data/datasets/medical/ima_plus_plus.py
torch_em/data/datasets/medical/imagecas.py
torch_em/data/datasets/medical/imagetbad.py
torch_em/data/datasets/medical/inbreast.py
torch_em/data/datasets/medical/insect_anatomy.py
torch_em/data/datasets/medical/instance22.py
torch_em/data/datasets/medical/intraretinal_cystoid_fluid.py
torch_em/data/datasets/medical/ircadb.py
torch_em/data/datasets/medical/isbi_mslesion.py
torch_em/data/datasets/medical/isic.py
torch_em/data/datasets/medical/isles.py
torch_em/data/datasets/medical/isles2024.py
torch_em/data/datasets/medical/iugc2024.py
torch_em/data/datasets/medical/jnuifm.py
torch_em/data/datasets/medical/jsrt.py
torch_em/data/datasets/medical/kipa.py
torch_em/data/datasets/medical/kits.py
torch_em/data/datasets/medical/kvasir.py
torch_em/data/datasets/medical/kvasir_instrument.py
torch_em/data/datasets/medical/lascarqs.py
torch_em/data/datasets/medical/lctsc.py
torch_em/data/datasets/medical/leg_3d_us.py
torch_em/data/datasets/medical/les_av.py
torch_em/data/datasets/medical/lgg_mri.py
torch_em/data/datasets/medical/lidc_idri.py
torch_em/data/datasets/medical/liver_hcc_seg.py
torch_em/data/datasets/medical/lndb.py
torch_em/data/datasets/medical/lnq.py
torch_em/data/datasets/medical/longciu.py
torch_em/data/datasets/medical/longitudinal_ct.py
torch_em/data/datasets/medical/longitudinal_mh_oct.py
torch_em/data/datasets/medical/lss_mri_aisslab.py
torch_em/data/datasets/medical/lumase.py
torch_em/data/datasets/medical/lumbar_spine_us.py
torch_em/data/datasets/medical/lumvbcanseg.py
torch_em/data/datasets/medical/m2caiseg.py
torch_em/data/datasets/medical/mama_mia.py
torch_em/data/datasets/medical/maternal_fetal_us_video.py
torch_em/data/datasets/medical/mbas.py
torch_em/data/datasets/medical/mbh_seg.py
torch_em/data/datasets/medical/mcrib.py
torch_em/data/datasets/medical/mct_ltdiag.py
torch_em/data/datasets/medical/mediastinal_ct.py
torch_em/data/datasets/medical/mendeley_ms.py
torch_em/data/datasets/medical/mice_tumseg.py
torch_em/data/datasets/medical/micro_usp.py
torch_em/data/datasets/medical/migs.py
torch_em/data/datasets/medical/mindboggle101.py
torch_em/data/datasets/medical/mmotu.py
torch_em/data/datasets/medical/mnms.py
torch_em/data/datasets/medical/montgomery.py
torch_em/data/datasets/medical/mosmed_plus.py
torch_em/data/datasets/medical/motum.py
torch_em/data/datasets/medical/mrbrains18.py
torch_em/data/datasets/medical/ms3seg.py
torch_em/data/datasets/medical/msd.py
torch_em/data/datasets/medical/mslesseg.py
torch_em/data/datasets/medical/mswal.py
torch_em/data/datasets/medical/multi_organ_abdominal_ct.py
torch_em/data/datasets/medical/muscle_us.py
torch_em/data/datasets/medical/mvaa.py
torch_em/data/datasets/medical/nasalseg.py
torch_em/data/datasets/medical/nci_isbi_prostate.py
torch_em/data/datasets/medical/nih_pancreas.py
torch_em/data/datasets/medical/nlstseg.py
torch_em/data/datasets/medical/npc_mri.py
torch_em/data/datasets/medical/nsclc_radiogenomics.py
torch_em/data/datasets/medical/nsclc_radiomics.py
torch_em/data/datasets/medical/nsclc_radiomics_interobserver1.py
torch_em/data/datasets/medical/oasis.py
torch_em/data/datasets/medical/oct5k.py
torch_em/data/datasets/medical/octa500.py
torch_em/data/datasets/medical/ocutox.py
torch_em/data/datasets/medical/oimhs.py
torch_em/data/datasets/medical/openkbp.py
torch_em/data/datasets/medical/openswisshcc.py
torch_em/data/datasets/medical/optic_nerve_sheaths.py
torch_em/data/datasets/medical/orcascore.py
torch_em/data/datasets/medical/orvs.py
torch_em/data/datasets/medical/osic_pulmofib.py
torch_em/data/datasets/medical/palm.py
torch_em/data/datasets/medical/pancreatic_ct_cbct_seg.py
torch_em/data/datasets/medical/pandental.py
torch_em/data/datasets/medical/panorama.py
torch_em/data/datasets/medical/pansegdata.py
torch_em/data/datasets/medical/pantrack.py
torch_em/data/datasets/medical/pants.py
torch_em/data/datasets/medical/papila.py
torch_em/data/datasets/medical/parse22.py
torch_em/data/datasets/medical/particleseg3d.py
torch_em/data/datasets/medical/paxray_pp.py
torch_em/data/datasets/medical/pddca.py
torch_em/data/datasets/medical/pediatric_ct_seg.py
torch_em/data/datasets/medical/pedims.py
torch_em/data/datasets/medical/pengwin.py
torch_em/data/datasets/medical/periorbital_seg.py
torch_em/data/datasets/medical/pfus1.py
torch_em/data/datasets/medical/ph2.py
torch_em/data/datasets/medical/phlf.py
torch_em/data/datasets/medical/picai.py
torch_em/data/datasets/medical/piccolo.py
torch_em/data/datasets/medical/pituitary_tumor.py
torch_em/data/datasets/medical/plaque_us.py
torch_em/data/datasets/medical/platif.py
torch_em/data/datasets/medical/plethora.py
torch_em/data/datasets/medical/pmcanalseg.py
torch_em/data/datasets/medical/polypgen.py
torch_em/data/datasets/medical/promise12.py
torch_em/data/datasets/medical/prostate158.py
torch_em/data/datasets/medical/prostate_edge_cases.py
torch_em/data/datasets/medical/prostatex.py
torch_em/data/datasets/medical/proteas.py
torch_em/data/datasets/medical/psfhs.py
torch_em/data/datasets/medical/psma_pet_ct.py
torch_em/data/datasets/medical/pu2756.py
torch_em/data/datasets/medical/puwf_av.py
torch_em/data/datasets/medical/qata_cov19.py
torch_em/data/datasets/medical/qin_lungct_seg.py
torch_em/data/datasets/medical/qin_prostate.py
torch_em/data/datasets/medical/radgenome_chestct.py
torch_em/data/datasets/medical/ravir.py
torch_em/data/datasets/medical/rcc_aid.py
torch_em/data/datasets/medical/recist_ct.py
torch_em/data/datasets/medical/refuge.py
torch_em/data/datasets/medical/remind.py
torch_em/data/datasets/medical/resect.py
torch_em/data/datasets/medical/reta.py
torch_em/data/datasets/medical/retouch.py
torch_em/data/datasets/medical/rexgroundingct.py
torch_em/data/datasets/medical/ribseg.py
torch_em/data/datasets/medical/rider_lung.py
torch_em/data/datasets/medical/riga_plus.py
torch_em/data/datasets/medical/rim_one_dl.py
torch_em/data/datasets/medical/robust_mips.py
torch_em/data/datasets/medical/rossa.py
torch_em/data/datasets/medical/rumc_kidney.py
torch_em/data/datasets/medical/rvo_me.py
torch_em/data/datasets/medical/sa_med2d.py
torch_em/data/datasets/medical/saros.py
torch_em/data/datasets/medical/scd.py
torch_em/data/datasets/medical/sega.py
torch_em/data/datasets/medical/segrap.py
torch_em/data/datasets/medical/segrap2025.py
torch_em/data/datasets/medical/segthor.py
torch_em/data/datasets/medical/segthy.py
torch_em/data/datasets/medical/semi_teethseg.py
torch_em/data/datasets/medical/siim_acr.py
torch_em/data/datasets/medical/ski10.py
torch_em/data/datasets/medical/skm_tea.py
torch_em/data/datasets/medical/sliver07.py
torch_em/data/datasets/medical/soft_tissue_sarcoma.py
torch_em/data/datasets/medical/spider.py
torch_em/data/datasets/medical/spinal_mm.py
torch_em/data/datasets/medical/spine_endoscopic_atlas.py
torch_em/data/datasets/medical/spine_mets.py
torch_em/data/datasets/medical/stanford_coca.py
torch_em/data/datasets/medical/stare.py
torch_em/data/datasets/medical/structseg.py
torch_em/data/datasets/medical/sts2024.py
torch_em/data/datasets/medical/sustech_sysu.py
torch_em/data/datasets/medical/tear_meniscus.py
torch_em/data/datasets/medical/tg3k.py
torch_em/data/datasets/medical/thyrln_pumch.py
torch_em/data/datasets/medical/tn3k.py
torch_em/data/datasets/medical/tom500.py
torch_em/data/datasets/medical/tongue_mri.py
torch_em/data/datasets/medical/toothfairy.py
torch_em/data/datasets/medical/topaneu.py
torch_em/data/datasets/medical/topbrain.py
torch_em/data/datasets/medical/topcow.py
torch_em/data/datasets/medical/totalsegmentator.py
torch_em/data/datasets/medical/totalsegmentator_effusion.py
torch_em/data/datasets/medical/totalsegmentator_hip_implant.py
torch_em/data/datasets/medical/totalsegmentator_liver_lesions.py
torch_em/data/datasets/medical/totalsegmentator_liver_lesions_mr.py
torch_em/data/datasets/medical/totalsegmentator_liver_segments_mr.py
torch_em/data/datasets/medical/totalsegmentator_mri.py
torch_em/data/datasets/medical/trackrad.py
torch_em/data/datasets/medical/trusted.py
torch_em/data/datasets/medical/uls23.py
torch_em/data/datasets/medical/ultracortex.py
torch_em/data/datasets/medical/upenn_gbm.py
torch_em/data/datasets/medical/ureteroscopy_lumen.py
torch_em/data/datasets/medical/us_nerve.py
torch_em/data/datasets/medical/us_sim_and_seg.py
torch_em/data/datasets/medical/ut_endomri.py
torch_em/data/datasets/medical/uwaterloo_skin.py
torch_em/data/datasets/medical/valdo.py
torch_em/data/datasets/medical/verse.py
torch_em/data/datasets/medical/vs_seg.py
torch_em/data/datasets/medical/waw_tace.py
torch_em/data/datasets/medical/wmh.py
torch_em/data/datasets/medical/woives.py
torch_em/data/datasets/medical/word.py
torch_em/loss/__init__.py
torch_em/loss/affinity_side_loss.py
torch_em/loss/cldice.py
torch_em/loss/combined_loss.py
torch_em/loss/contrastive.py
torch_em/loss/contrastive_impl.py
torch_em/loss/dice.py
torch_em/loss/distance_based.py
torch_em/loss/spoco_loss.py
torch_em/loss/wrapper.py
torch_em/metric/__init__.py
torch_em/metric/cldice.py
torch_em/metric/instance_segmentation_metric.py
torch_em/model/__init__.py
torch_em/model/probabilistic_unet.py
torch_em/model/resnet3d.py
torch_em/model/torchvision_unet.py
torch_em/model/unet.py
torch_em/model/unetr.py
torch_em/model/vim.py
torch_em/model/vit.py
torch_em/self_training/__init__.py
torch_em/self_training/augmentations.py
torch_em/self_training/fix_match.py
torch_em/self_training/logger.py
torch_em/self_training/loss.py
torch_em/self_training/mean_teacher.py
torch_em/self_training/probabilistic_unet_trainer.py
torch_em/self_training/pseudo_labeling.py
torch_em/self_training/uni_match_v2.py
torch_em/shallow2deep/__init__.py
torch_em/shallow2deep/prepare_shallow2deep.py
torch_em/shallow2deep/pseudolabel_training.py
torch_em/shallow2deep/shallow2deep_dataset.py
torch_em/shallow2deep/shallow2deep_eval.py
torch_em/shallow2deep/shallow2deep_model.py
torch_em/shallow2deep/transform.py
torch_em/trainer/__init__.py
torch_em/trainer/default_trainer.py
torch_em/trainer/flashoptim_trainer.py
torch_em/trainer/logger_base.py
torch_em/trainer/spoco_trainer.py
torch_em/trainer/tensorboard_logger.py
torch_em/trainer/wandb_logger.py
torch_em/transform/__init__.py
torch_em/transform/augmentation.py
torch_em/transform/defect.py
torch_em/transform/generic.py
torch_em/transform/invertible_augmentations.py
torch_em/transform/label.py
torch_em/transform/nnunet_raw.py
torch_em/transform/raw.py
torch_em/util/__init__.py
torch_em/util/debug.py
torch_em/util/grid_search.py
torch_em/util/image.py
torch_em/util/memory.py
torch_em/util/modelzoo.py
torch_em/util/prediction.py
torch_em/util/reporting.py
torch_em/util/segmentation.py
torch_em/util/submit_slurm.py
torch_em/util/test.py
torch_em/util/training.py
torch_em/util/util.py
torch_em/util/validation.py