.editorconfig
.gitignore
.travis.yml
AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
L3_prediction_test.sh
LICENSE
MANIFEST.in
Makefile
README.rst
network_evaluation_example.py
pcnet_py3.yml
requirements.txt
requirements_dev.txt
requirements_stateoftheinteractomes.txt
setup.cfg
setup.py
test_AF_msa.sh
test_AF_predict.sh
testfile.txt
tox.ini
upload_network.py
ExampleUsage/AF_AlphaFold.README.md
ExampleUsage/AF_fasta_pairs.sh
ExampleUsage/AF_get_fastas.sh
ExampleUsage/GSR_GeneSetRecovery.README.md
ExampleUsage/GSR_run_evaluation.sh
ExampleUsage/IP_InteractionPrediction.README.md
ExampleUsage/IP_createFolds.sh
ExampleUsage/IP_make_csvs.sh
ExampleUsage/IP_run_L3.sh
ExampleUsage/IP_run_MPS_topology.sh
ExampleUsage/IP_run_coverage.sh
ExampleUsage/IP_run_external.sh
ExampleUsage/IP_run_heldout.sh
ExampleUsage/NP_NetworkProcessing.README.md
ExampleUsage/NP_process_data.sh
ExampleUsage/PC_PCNets.README.md
ExampleUsage/PC_create_composites.sh
ExampleUsage/process_data_job.sh
ExampleUsage/run_L3_prediction.sh
ExampleUsage/run_MPS_prediction.sh
ExampleUsage/run_MPS_topology.sh
ExampleUsage/run_composite.sh
ExampleUsage/run_single_evaluation.sh
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/devbranches.rst
docs/developer.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/integrationtesting.rst
docs/make.bat
docs/modules.rst
docs/neteval.rst
docs/newrelease.rst
docs/pypircfile.rst
docs/usage.rst
docs/versioningscheme.rst
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
neteval/L3_prediction.sh
neteval/Timer.py
neteval/__init__.py
neteval/alphafold_results.py
neteval/community_annotation.py
neteval/complex_evaluation.py
neteval/data_import_export_tools.py
neteval/edge_prediction.py
neteval/gene_mapper.py
neteval/gene_set_recovery_results.py
neteval/get_disgen_associations.py
neteval/get_gwas_associations.py
neteval/gsea_functions.py
neteval/netevalcmd.py
neteval/network_constructor.py
neteval/network_evaluation_functions.py
neteval/network_propagation.py
neteval/network_statistics.py
neteval/node_annotation.py
neteval/prepare_evaluation_data.py
neteval/process_data.py
neteval/processing_functions.py
neteval/query_ensembl.py
neteval/query_hgnc.py
neteval/query_uniprot.py
neteval/run_network_evaluation.py
neteval/shuffle_networks.py
neteval.egg-info/PKG-INFO
neteval.egg-info/SOURCES.txt
neteval.egg-info/dependency_links.txt
neteval.egg-info/not-zip-safe
neteval.egg-info/requires.txt
neteval.egg-info/top_level.txt
tests/__init__.py
tests/test_NetevalRunner_UI.py
tests/test_dit.py
tests/test_edge_prediction.py
tests/test_evaluation.py
tests/test_gene_mapper_UI.py
tests/test_integration_neteval.py
tests/test_netevalcmd.py
tests/test_node_annotation.py
tests/test_processing_functions.py
tests/test_profiler_archive.py
tests/test_shuffle.py
tests/test_type_mapper_archive.py
tests/data/BIND_v8_shuffled.txt
tests/data/create_toy_obo.py
tests/data/edge_only_symbol.txt
tests/data/example_GS_edges.txt
tests/data/example_genesets.txt
tests/data/example_graph.txt
tests/data/example_graph_attributes.txt
tests/data/export_test_network.txt
tests/data/export_test_pcnet.txt
tests/data/pmid_assigned.txt
tests/data/pmid_evidence_test_data.txt
tests/data/pmid_unassigned.txt
tests/data/pmids.txt
tests/data/sub_go.obo
tests/data/sub_go_associations.txt