MS²Rescore performs sensitive rescoring of peptide-spectrum matches (PSMs) using features from predictors of peptide behavior in LC-MS, such as MS²PIP for spectrum prediction, and DeepLC for retention time prediction. Rescoring is performed with Percolator or Mokapot.
Please cite:
MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates.
Arthur Declercq, Robbin Bouwmeester, Aurélie Hirschler, Christine Carapito, Sven Degroeve, Lennart Martens, Ralf Gabriels
Molecular & Cellular Proteomics (2021) doi:10.1016/j.mcpro.2022