CITATION.cff
LICENSE
LICENSE-MIT-IINTS-LEGACY
MANIFEST.in
NOTICE
README.md
pyproject.toml
docs/ACADEMIC_RESEARCH_WORKBENCH.md
docs/AI_ASSISTANT.md
docs/AI_RED_TEAM_AUDITOR.md
docs/ALL_SCIENTIFIC_THEORIES.md
docs/API_REFERENCE.md
docs/APP_INSTALL.md
docs/ARCHITECTURE_HARDENING.md
docs/ARCHITECTURE_OVERVIEW.md
docs/ARDUINO_UNO_Q.md
docs/BOOTH_DEMO.md
docs/CLI_CHEATSHEET.md
docs/COMMAND_REFERENCE.md
docs/COMPREHENSIVE_GUIDE.md
docs/CONTRIBUTING_SAFELY.md
docs/CORE_CONCEPTS.md
docs/CROSS_SCALE_REFERENCE_LABS.md
docs/DESKTOP_APP.md
docs/DESKTOP_SIGNING.md
docs/DEVELOPER_PORTAL.md
docs/DIABETES_RESEARCH_DATASETS.md
docs/DIGITAL_PATIENT_PI.md
docs/DIGITAL_TWIN_BIOLOGY.md
docs/DOCUMENTATION_INDEX.md
docs/DUAL_REPO_WORKFLOW.md
docs/EDGE_HARDWARE.md
docs/EDGE_REMOTE_DEPLOY.md
docs/EU_AI_PACT_GOVERNANCE.md
docs/EVIDENCE_BASE.md
docs/EVIDENCE_BUNDLE.md
docs/FORMULA_REGISTRY.md
docs/FPGA_MODE.md
docs/GETTING_STARTED.md
docs/GLUCOSE_MODEL.md
docs/HARDWARE.md
docs/HYPOGLYCEMIA_SCIENCE_MODEL.md
docs/INSTALLATION.md
docs/JETSON_AUTOML_FACTORY.md
docs/JETSON_ENDURANCE.md
docs/LEARNING_PATH.md
docs/LOCAL_AI_RESEARCH.md
docs/LOCAL_AI_SAFETY_GATES.md
docs/MAINTAINER_GUIDE.md
docs/MAKERFAIRE_PI.md
docs/MAKERFAIRE_PI_CHECKLIST.md
docs/MDMP.md
docs/MDMP_FULL_GUIDE.md
docs/MDMP_QUICKSTART.md
docs/MECHANISTIC_REFERENCE_MODELS.md
docs/MEDTRONIC_CARELINK_LIVE_BRIDGE.md
docs/MEDTRONIC_DIRECT_PUMP_TRANSPORT.md
docs/MISTRAL_MODEL_MIGRATION.md
docs/NUMERIC_AUTHORITY.md
docs/OBSIDIAN_PUBLIC_VAULT.md
docs/OFFICIAL_MANUAL.md
docs/PAPER_TECHNICAL_DOSSIER.md
docs/PHYSIOLOGY_REFERENCE.md
docs/PICO_PUMP_LAB.md
docs/PLAIN_LANGUAGE_GUIDE.md
docs/PROJECT_BOUNDARIES.md
docs/PUBLIC_DOCUMENTATION.md
docs/PUBLIC_RELEASE_CHECKLIST.md
docs/QUICKSTART.md
docs/REAL_DATA_REALISM.md
docs/REFERENCE_OVERVIEW.md
docs/RESEARCH_WORKBENCH_GUIDE.md
docs/RUN_OUTPUTS.md
docs/SCIENTIFIC_WORKFLOW.md
docs/SOURCE_LIBRARY.md
docs/STUDY_ANALYSIS.md
docs/TAURI_DESKTOP.md
docs/TECHNICAL_README.md
docs/THEORY_STRESS_LAB.md
docs/TROUBLESHOOTING.md
docs/UPDATING.md
docs/USER_GUIDE_MAP.md
docs/WORKFLOWS.md
docs/comparison_interpretation.md
docs/emulation_references.md
docs/index.md
src/iints/__init__.py
src/iints/demo_assets.py
src/iints/highlevel.py
src/iints/metrics.py
src/iints/ai/__init__.py
src/iints/ai/assistant.py
src/iints/ai/cli.py
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src/iints/ai/insights.py
src/iints/ai/mdmp_guard.py
src/iints/ai/model_catalog.py
src/iints/ai/prepare.py
src/iints/ai/prompts.py
src/iints/ai/backends/__init__.py
src/iints/ai/backends/base.py
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src/iints/ai/backends/ollama.py
src/iints/analysis/__init__.py
src/iints/analysis/algorithm_xray.py
src/iints/analysis/baseline.py
src/iints/analysis/booth_demo.py
src/iints/analysis/carelink_workbench.py
src/iints/analysis/clinical_benchmark.py
src/iints/analysis/clinical_metrics.py
src/iints/analysis/clinical_tir_analyzer.py
src/iints/analysis/diabetes_metrics.py
src/iints/analysis/edge_efficiency.py
src/iints/analysis/edge_performance_monitor.py
src/iints/analysis/eucys_results.py
src/iints/analysis/evidence_bundle.py
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src/iints/analysis/explainable_ai.py
src/iints/analysis/hardware_benchmark.py
src/iints/analysis/metrics.py
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src/iints/analysis/poster.py
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src/iints/analysis/safety_index.py
src/iints/analysis/safety_visualizer.py
src/iints/analysis/sensor_filtering.py
src/iints/analysis/study_analysis.py
src/iints/analysis/study_engine.py
src/iints/analysis/study_experiment.py
src/iints/analysis/study_poster.py
src/iints/analysis/study_protocol.py
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src/iints/api/__init__.py
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src/iints/api/registry.py
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src/iints/assets/iints_logo.png
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src/iints/cli/cli.py
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src/iints/core/clinical_metrics.py
src/iints/core/device.py
src/iints/core/device_manager.py
src/iints/core/digital_twin.py
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src/iints/core/physiology_variation.py
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src/iints/core/units.py
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src/iints/core/algorithms/battle_runner.py
src/iints/core/algorithms/clinical_baseline.py
src/iints/core/algorithms/correction_bolus.py
src/iints/core/algorithms/discovery.py
src/iints/core/algorithms/fixed_basal_bolus.py
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src/iints/core/algorithms/neural_controller.py
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src/iints/core/algorithms/standard_pump_algo.py
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src/iints/core/devices/models.py
src/iints/core/patient/__init__.py
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src/iints/core/patient/hovorka_model.py
src/iints/core/patient/models.py
src/iints/core/patient/patient_factory.py
src/iints/core/patient/physiology.py
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src/iints/core/safety/config.py
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src/iints/core/simulation/__init__.py
src/iints/core/simulation/scenario_parser.py
src/iints/data/__init__.py
src/iints/data/adapter.py
src/iints/data/certify.py
src/iints/data/column_mapper.py
src/iints/data/contracts.py
src/iints/data/datasets.json
src/iints/data/evidence.py
src/iints/data/guardians.py
src/iints/data/importer.py
src/iints/data/ingestor.py
src/iints/data/mdmp_visualizer.py
src/iints/data/medtronic_live.py
src/iints/data/nightscout.py
src/iints/data/physiology_residual_profiles.json
src/iints/data/quality_checker.py
src/iints/data/realism_dashboard.py
src/iints/data/realism_governance.py
src/iints/data/realism_reference.py
src/iints/data/realism_references.json
src/iints/data/realism_validator.py
src/iints/data/registry.py
src/iints/data/research_catalog.py
src/iints/data/runner.py
src/iints/data/study_corruption.py
src/iints/data/synthetic_mirror.py
src/iints/data/tidepool.py
src/iints/data/universal_parser.py
src/iints/data/contracts/diabetes_cgm_mdmp_contract.yaml
src/iints/data/demo/__init__.py
src/iints/data/demo/demo_cgm.csv
src/iints/data/virtual_patients/clinic_safe_baseline.yaml
src/iints/data/virtual_patients/clinic_safe_hyper_challenge.yaml
src/iints/data/virtual_patients/clinic_safe_hypo_prone.yaml
src/iints/data/virtual_patients/clinic_safe_midnight.yaml
src/iints/data/virtual_patients/clinic_safe_pizza.yaml
src/iints/data/virtual_patients/clinic_safe_stress_meal.yaml
src/iints/data/virtual_patients/default_patient.yaml
src/iints/data/virtual_patients/patient_559_config.yaml
src/iints/data/virtual_patients/reference_azt1d_t1d.yaml
src/iints/data/virtual_patients/reference_free_living_t1d.yaml
src/iints/data/virtual_patients/reference_hupa_ucm_t1d.yaml
src/iints/emulation/__init__.py
src/iints/emulation/legacy_base.py
src/iints/emulation/medtronic_780g.py
src/iints/emulation/omnipod_5.py
src/iints/emulation/tandem_controliq.py
src/iints/governance/__init__.py
src/iints/governance/research_policy.py
src/iints/jetson/__init__.py
src/iints/jetson/endurance.py
src/iints/jetson/research_pipeline.py
src/iints/learning/__init__.py
src/iints/learning/autonomous_optimizer.py
src/iints/learning/learning_system.py
src/iints/live_patient/__init__.py
src/iints/live_patient/api.py
src/iints/live_patient/daemon.py
src/iints/live_patient/edge_benchmark.py
src/iints/live_patient/edge_ops.py
src/iints/live_patient/fpga.py
src/iints/live_patient/long_study.py
src/iints/live_patient/medtronic_direct.py
src/iints/live_patient/pico_pump.py
src/iints/live_patient/runtime.py
src/iints/live_patient/service_export.py
src/iints/live_patient/uno_q.py
src/iints/mdmp/__init__.py
src/iints/mdmp/backend.py
src/iints/mdmp/eu_ai_pact.py
src/iints/population/__init__.py
src/iints/population/generator.py
src/iints/population/runner.py
src/iints/presets/__init__.py
src/iints/presets/evidence_sources.yaml
src/iints/presets/forecast_calibration_profiles.yaml
src/iints/presets/golden_benchmark.yaml
src/iints/presets/presets.json
src/iints/presets/safety_contract_default.yaml
src/iints/presets/validation_profiles.yaml
src/iints/research/__init__.py
src/iints/research/academic_bundle.py
src/iints/research/alphafold_engine.py
src/iints/research/anatomy.py
src/iints/research/audit.py
src/iints/research/binding_evidence.py
src/iints/research/calibration_gate.py
src/iints/research/cellml_models.py
src/iints/research/clinvar_engine.py
src/iints/research/config.py
src/iints/research/control.py
src/iints/research/control_eval.py
src/iints/research/copasi_models.py
src/iints/research/data_blend.py
src/iints/research/dataset.py
src/iints/research/evaluation.py
src/iints/research/external_models_common.py
src/iints/research/fmi_models.py
src/iints/research/forecasting.py
src/iints/research/genetics.py
src/iints/research/genomics_engine.py
src/iints/research/glucose_model.py
src/iints/research/jetson_hf_trainer.py
src/iints/research/local_ai.py
src/iints/research/local_ai_gate.py
src/iints/research/losses.py
src/iints/research/mechanistic_models.py
src/iints/research/metrics.py
src/iints/research/model_registry.py
src/iints/research/neural_control.py
src/iints/research/pharmacology.py
src/iints/research/physiology.py
src/iints/research/physiology_calibration.py
src/iints/research/predictor.py
src/iints/research/results_manager.py
src/iints/research/stem_cell_optimizer.py
src/iints/research/stem_cell_transplant.py
src/iints/research/structure.py
src/iints/research/tissue_stressor.py
src/iints/scenarios/__init__.py
src/iints/scenarios/generator.py
src/iints/scenarios/study_pack.py
src/iints/templates/__init__.py
src/iints/templates/default_algorithm.py
src/iints/templates/demos/__init__.py
src/iints/templates/demos/live_stage_demo.py
src/iints/templates/pico_pump/README.md
src/iints/templates/pico_pump/code.py
src/iints/templates/pico_pump/serial_protocol.txt
src/iints/templates/scenarios/__init__.py
src/iints/templates/scenarios/chaos_insulin_stacking.json
src/iints/templates/scenarios/chaos_runaway_ai.json
src/iints/templates/scenarios/example_scenario.json
src/iints/templates/scenarios/exercise_stress.json
src/iints/templates/uno_q/README.md
src/iints/templates/uno_q/iints_supervisor_bridge.ino
src/iints/tools/ai_realism_auditor.py
src/iints/tools/digital_twin_calibrator.py
src/iints/tools/theory_stress_lab.py
src/iints/utils/__init__.py
src/iints/utils/academic_artifacts.py
src/iints/utils/csv_safety.py
src/iints/utils/plotting.py
src/iints/utils/run_io.py
src/iints/utils/url_safety.py
src/iints/validation/__init__.py
src/iints/validation/golden.py
src/iints/validation/replay.py
src/iints/validation/run_doctor.py
src/iints/validation/run_validation.py
src/iints/validation/safety_contract.py
src/iints/validation/schemas.py
src/iints/visualization/__init__.py
src/iints/visualization/cockpit.py
src/iints/visualization/uncertainty_cloud.py
src/iints_desktop/__init__.py
src/iints_desktop/app.py
src/iints_desktop/cocoa_app.py
src/iints_desktop/engine.py
src/iints_desktop/evidence_connectors.py
src/iints_desktop/fetcher.py
src/iints_desktop/launcher.py
src/iints_desktop/local_ai.py
src/iints_desktop/mdmp.py
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src/iints_desktop/molecules.py
src/iints_desktop/qt_app.py
src/iints_desktop/render_3dmol.py
src/iints_desktop/results.py
src/iints_desktop/tauri_bridge.py
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src/iints_sdk_python35.egg-info/PKG-INFO
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src/iints_sdk_python35.egg-info/dependency_links.txt
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src/iints_sdk_python35.egg-info/requires.txt
src/iints_sdk_python35.egg-info/top_level.txt
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src/mdmp_core/certification.py
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src/mdmp_core/conformance.py
src/mdmp_core/contracts.py
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