| src/driada/dim_reduction/data.py |
check_data_for_errors |
6 |
6 |
0 |
0.00% |
| src/driada/dim_reduction/data.py |
MVData.__init__ |
15 |
4 |
0 |
73.33% |
| src/driada/dim_reduction/data.py |
MVData.median_filter |
4 |
4 |
0 |
0.00% |
| src/driada/dim_reduction/data.py |
MVData.corr_mat |
2 |
2 |
0 |
0.00% |
| src/driada/dim_reduction/data.py |
MVData.get_distmat |
21 |
13 |
0 |
38.10% |
| src/driada/dim_reduction/data.py |
MVData.get_embedding |
35 |
5 |
0 |
85.71% |
| src/driada/dim_reduction/data.py |
MVData.get_proximity_graph |
4 |
1 |
0 |
75.00% |
| src/driada/dim_reduction/data.py |
MVData.draw_vector |
3 |
3 |
0 |
0.00% |
| src/driada/dim_reduction/data.py |
MVData.draw_row |
3 |
3 |
0 |
0.00% |
| src/driada/dim_reduction/data.py |
(no function) |
17 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/dim_reduction.py |
dr_series |
50 |
50 |
0 |
0.00% |
| src/driada/dim_reduction/dim_reduction.py |
(no function) |
5 |
5 |
0 |
0.00% |
| src/driada/dim_reduction/dr_base.py |
DRMethod.__init__ |
7 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/dr_base.py |
m_param_filter |
11 |
4 |
0 |
63.64% |
| src/driada/dim_reduction/dr_base.py |
g_param_filter |
11 |
4 |
0 |
63.64% |
| src/driada/dim_reduction/dr_base.py |
e_param_filter |
6 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/dr_base.py |
merge_params_with_defaults |
30 |
12 |
0 |
60.00% |
| src/driada/dim_reduction/dr_base.py |
(no function) |
14 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
norm_cross_corr |
4 |
4 |
0 |
0.00% |
| src/driada/dim_reduction/embedding.py |
remove_outliers |
4 |
4 |
0 |
0.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.__init__ |
19 |
3 |
0 |
84.21% |
| src/driada/dim_reduction/embedding.py |
Embedding.build |
7 |
1 |
0 |
85.71% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_pca_embedding_ |
5 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_isomap_embedding_ |
5 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_mds_embedding_ |
7 |
2 |
0 |
71.43% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_mvu_embedding_ |
3 |
1 |
0 |
66.67% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_lle_embedding_ |
3 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_hlle_embedding_ |
3 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_le_embedding_ |
15 |
1 |
0 |
93.33% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_auto_le_embedding_ |
5 |
5 |
0 |
0.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_dmaps_embedding_ |
1 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_auto_dmaps_embedding_ |
9 |
9 |
0 |
0.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_tsne_embedding_ |
3 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_umap_embedding_ |
4 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_ae_embedding_ |
74 |
11 |
0 |
85.14% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_ae_embedding_.correlation_loss |
4 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_ae_embedding_.data_orthogonality_loss |
6 |
6 |
0 |
0.00% |
| src/driada/dim_reduction/embedding.py |
Embedding.create_vae_embedding_ |
52 |
2 |
0 |
96.15% |
| src/driada/dim_reduction/embedding.py |
Embedding.continue_learning |
4 |
4 |
0 |
0.00% |
| src/driada/dim_reduction/embedding.py |
(no function) |
34 |
2 |
0 |
94.12% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.__init__ |
21 |
7 |
0 |
66.67% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.distances_to_affinities |
11 |
2 |
0 |
81.82% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.construct_adjacency |
2 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph._checkpoint |
8 |
2 |
0 |
75.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.create_umap_graph_ |
3 |
3 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.create_knn_graph_ |
17 |
2 |
0 |
88.24% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.create_auto_knn_graph_ |
5 |
5 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.create_eps_graph_ |
17 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.calculate_indim |
53 |
53 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.calculate_indim.normalizing_const |
7 |
7 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.calculate_indim.func |
1 |
1 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.calculate_indim.func2 |
1 |
1 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
ProximityGraph.scaling |
5 |
5 |
0 |
0.00% |
| src/driada/dim_reduction/graph.py |
(no function) |
23 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/manifold_metrics.py |
compute_distance_matrix |
4 |
1 |
0 |
75.00% |
| src/driada/dim_reduction/manifold_metrics.py |
knn_preservation_rate |
18 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/manifold_metrics.py |
trustworthiness |
22 |
2 |
0 |
90.91% |
| src/driada/dim_reduction/manifold_metrics.py |
continuity |
22 |
3 |
0 |
86.36% |
| src/driada/dim_reduction/manifold_metrics.py |
geodesic_distance_correlation |
16 |
4 |
0 |
75.00% |
| src/driada/dim_reduction/manifold_metrics.py |
stress |
7 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/manifold_metrics.py |
circular_structure_preservation |
26 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/manifold_metrics.py |
procrustes_analysis |
18 |
3 |
0 |
83.33% |
| src/driada/dim_reduction/manifold_metrics.py |
manifold_preservation_score |
8 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/manifold_metrics.py |
circular_distance |
2 |
2 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
extract_angles_from_embedding |
5 |
5 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
compute_reconstruction_error |
9 |
9 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
compute_temporal_consistency |
17 |
17 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
train_simple_decoder |
19 |
19 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
train_simple_decoder.decoder |
4 |
4 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
compute_decoding_accuracy |
14 |
14 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
manifold_reconstruction_score |
12 |
12 |
0 |
0.00% |
| src/driada/dim_reduction/manifold_metrics.py |
(no function) |
22 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/mvu.py |
MaximumVarianceUnfolding.__init__ |
8 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/mvu.py |
MaximumVarianceUnfolding.fit |
34 |
34 |
0 |
0.00% |
| src/driada/dim_reduction/mvu.py |
MaximumVarianceUnfolding.fit_transform |
11 |
11 |
0 |
0.00% |
| src/driada/dim_reduction/mvu.py |
(no function) |
8 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
Encoder.__init__ |
12 |
3 |
0 |
75.00% |
| src/driada/dim_reduction/neural.py |
Encoder.forward |
6 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
VAEEncoder.__init__ |
12 |
2 |
0 |
83.33% |
| src/driada/dim_reduction/neural.py |
VAEEncoder.forward |
5 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
Decoder.__init__ |
12 |
2 |
0 |
83.33% |
| src/driada/dim_reduction/neural.py |
Decoder.forward |
6 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
AE.__init__ |
7 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
AE.forward |
3 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
AE.get_code_embedding |
3 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
VAE.__init__ |
6 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
VAE.reparameterization |
4 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
VAE.get_code |
6 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
VAE.forward |
3 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
VAE.get_code_embedding |
2 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
NeuroDataset.__init__ |
2 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
NeuroDataset.__len__ |
1 |
0 |
0 |
100.00% |
| src/driada/dim_reduction/neural.py |
NeuroDataset.__getitem__ |
6 |
2 |
0 |
66.67% |
| src/driada/dim_reduction/neural.py |
(no function) |
28 |
0 |
0 |
100.00% |
| src/driada/dimensionality/effective.py |
_eff_dim |
10 |
2 |
0 |
80.00% |
| src/driada/dimensionality/effective.py |
eff_dim |
9 |
0 |
0 |
100.00% |
| src/driada/dimensionality/effective.py |
(no function) |
7 |
0 |
0 |
100.00% |
| src/driada/dimensionality/intrinsic.py |
nn_dimension |
24 |
3 |
0 |
87.50% |
| src/driada/dimensionality/intrinsic.py |
correlation_dimension |
23 |
2 |
0 |
91.30% |
| src/driada/dimensionality/intrinsic.py |
(no function) |
5 |
0 |
0 |
100.00% |
| src/driada/dimensionality/linear.py |
pca_dimension |
16 |
2 |
0 |
87.50% |
| src/driada/dimensionality/linear.py |
pca_dimension_profile |
20 |
1 |
0 |
95.00% |
| src/driada/dimensionality/linear.py |
effective_rank |
13 |
0 |
0 |
100.00% |
| src/driada/dimensionality/linear.py |
(no function) |
5 |
0 |
0 |
100.00% |
| src/driada/dimensionality/utils.py |
res_var_metric |
2 |
2 |
0 |
0.00% |
| src/driada/dimensionality/utils.py |
correct_cov_spectrum |
34 |
0 |
0 |
100.00% |
| src/driada/dimensionality/utils.py |
(no function) |
8 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_base.py |
check_dynamic_features |
14 |
3 |
0 |
78.57% |
| src/driada/experiment/exp_base.py |
Experiment.__init__ |
62 |
8 |
0 |
87.10% |
| src/driada/experiment/exp_base.py |
Experiment.check_ds |
5 |
2 |
0 |
60.00% |
| src/driada/experiment/exp_base.py |
Experiment._set_selectivity_tables |
5 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_base.py |
Experiment._build_pair_hash |
20 |
9 |
0 |
55.00% |
| src/driada/experiment/exp_base.py |
Experiment._build_data_hashes |
5 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_base.py |
Experiment._trim_data |
16 |
16 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment._checkpoint |
12 |
6 |
0 |
50.00% |
| src/driada/experiment/exp_base.py |
Experiment._populate_cell_feat_dict |
4 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_base.py |
Experiment._process_cbunch |
6 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_base.py |
Experiment._process_fbunch |
18 |
2 |
0 |
88.89% |
| src/driada/experiment/exp_base.py |
Experiment._process_sbunch |
8 |
8 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment._add_multifeature_to_data_hashes |
9 |
9 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment._add_multifeature_to_stats |
9 |
9 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment._check_stats_relevance |
10 |
4 |
0 |
60.00% |
| src/driada/experiment/exp_base.py |
Experiment._update_stats_and_significance |
4 |
1 |
0 |
75.00% |
| src/driada/experiment/exp_base.py |
Experiment.update_neuron_feature_pair_stats |
8 |
5 |
0 |
37.50% |
| src/driada/experiment/exp_base.py |
Experiment.update_neuron_feature_pair_significance |
6 |
3 |
0 |
50.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_neuron_feature_pair_stats |
5 |
1 |
0 |
80.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_neuron_feature_pair_significance |
5 |
5 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_multicell_shuffled_calcium |
9 |
9 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_multicell_shuffled_spikes |
11 |
11 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_stats_slice |
13 |
13 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_significance_slice |
1 |
1 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_feature_entropy |
9 |
6 |
0 |
33.33% |
| src/driada/experiment/exp_base.py |
Experiment._reconstruct_spikes |
9 |
3 |
0 |
66.67% |
| src/driada/experiment/exp_base.py |
Experiment.get_significant_neurons |
12 |
1 |
0 |
91.67% |
| src/driada/experiment/exp_base.py |
Experiment.save_mi_significance_to_file |
2 |
2 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.clear_cells_mi_significance_data |
5 |
5 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.clear_features_mi_significance_data |
1 |
1 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.clear_cell_feat_mi_significance_data |
1 |
1 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment._load_precomputed_data |
2 |
2 |
0 |
0.00% |
| src/driada/experiment/exp_base.py |
Experiment.store_embedding |
7 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_base.py |
Experiment.get_embedding |
5 |
1 |
0 |
80.00% |
| src/driada/experiment/exp_base.py |
(no function) |
50 |
0 |
0 |
100.00% |
| src/driada/experiment/exp_build.py |
load_exp_from_aligned_data |
46 |
46 |
0 |
0.00% |
| src/driada/experiment/exp_build.py |
load_exp_from_aligned_data.is_garbage |
1 |
1 |
0 |
0.00% |
| src/driada/experiment/exp_build.py |
load_experiment |
36 |
36 |
0 |
0.00% |
| src/driada/experiment/exp_build.py |
save_exp_to_pickle |
4 |
4 |
0 |
0.00% |
| src/driada/experiment/exp_build.py |
load_exp_from_pickle |
5 |
5 |
0 |
0.00% |
| src/driada/experiment/exp_build.py |
(no function) |
14 |
0 |
0 |
100.00% |
| src/driada/experiment/neuron.py |
Neuron.spike_form |
2 |
2 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_restored_calcium |
4 |
4 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.ca_mse_error |
2 |
2 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.calcium_preprocessing |
3 |
0 |
0 |
100.00% |
| src/driada/experiment/neuron.py |
Neuron.__init__ |
26 |
3 |
0 |
88.46% |
| src/driada/experiment/neuron.py |
Neuron.reconstruct_spikes |
1 |
1 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_mad |
6 |
6 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_snr |
3 |
3 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron._calc_snr |
8 |
8 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_t_off |
3 |
3 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_noise_ampl |
3 |
3 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron._fit_t_off |
6 |
6 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_shuffled_calcium |
9 |
9 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron._shuffle_calcium_data_waveform_based |
8 |
8 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron._shuffle_calcium_data_chunks_based |
10 |
10 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron._shuffle_calcium_data_roll_based |
6 |
6 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron.get_shuffled_spikes |
10 |
10 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
Neuron._shuffle_spikes_data_isi_based |
16 |
16 |
0 |
0.00% |
| src/driada/experiment/neuron.py |
(no function) |
35 |
0 |
0 |
100.00% |
| src/driada/experiment/spike_reconstruction.py |
reconstruct_spikes |
8 |
0 |
0 |
100.00% |
| src/driada/experiment/spike_reconstruction.py |
wavelet_reconstruction |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/spike_reconstruction.py |
threshold_reconstruction |
21 |
0 |
0 |
100.00% |
| src/driada/experiment/spike_reconstruction.py |
(no function) |
9 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/core.py |
validate_peak_rate |
5 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/core.py |
generate_pseudo_calcium_signal |
20 |
6 |
0 |
70.00% |
| src/driada/experiment/synthetic/core.py |
generate_pseudo_calcium_multisignal |
8 |
8 |
0 |
0.00% |
| src/driada/experiment/synthetic/core.py |
(no function) |
7 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/experiment_generators.py |
generate_synthetic_data |
53 |
5 |
0 |
90.57% |
| src/driada/experiment/synthetic/experiment_generators.py |
generate_synthetic_exp |
23 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/experiment_generators.py |
generate_mixed_population_exp |
187 |
58 |
0 |
68.98% |
| src/driada/experiment/synthetic/experiment_generators.py |
(no function) |
13 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_circular.py |
generate_circular_random_walk |
6 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_circular.py |
von_mises_tuning_curve |
2 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_circular.py |
generate_circular_manifold_neurons |
15 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_circular.py |
generate_circular_manifold_data |
23 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_circular.py |
generate_circular_manifold_exp |
17 |
4 |
0 |
76.47% |
| src/driada/experiment/synthetic/manifold_circular.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_2d.py |
generate_2d_random_walk |
17 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_2d.py |
gaussian_place_field |
5 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_2d.py |
generate_2d_manifold_neurons |
29 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_2d.py |
generate_2d_manifold_data |
23 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_2d.py |
generate_2d_manifold_exp |
14 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_2d.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/manifold_spatial_3d.py |
generate_3d_random_walk |
17 |
17 |
0 |
0.00% |
| src/driada/experiment/synthetic/manifold_spatial_3d.py |
gaussian_place_field_3d |
6 |
6 |
0 |
0.00% |
| src/driada/experiment/synthetic/manifold_spatial_3d.py |
generate_3d_manifold_neurons |
33 |
33 |
0 |
0.00% |
| src/driada/experiment/synthetic/manifold_spatial_3d.py |
generate_3d_manifold_data |
23 |
23 |
0 |
0.00% |
| src/driada/experiment/synthetic/manifold_spatial_3d.py |
generate_3d_manifold_exp |
15 |
15 |
0 |
0.00% |
| src/driada/experiment/synthetic/manifold_spatial_3d.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/mixed_selectivity.py |
generate_multiselectivity_patterns |
20 |
1 |
0 |
95.00% |
| src/driada/experiment/synthetic/mixed_selectivity.py |
generate_mixed_selective_signal |
21 |
1 |
0 |
95.24% |
| src/driada/experiment/synthetic/mixed_selectivity.py |
generate_synthetic_data_mixed_selectivity |
15 |
1 |
0 |
93.33% |
| src/driada/experiment/synthetic/mixed_selectivity.py |
generate_synthetic_exp_with_mixed_selectivity |
60 |
7 |
0 |
88.33% |
| src/driada/experiment/synthetic/mixed_selectivity.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/time_series.py |
generate_binary_time_series |
28 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/time_series.py |
apply_poisson_to_binary_series |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/time_series.py |
delete_one_islands |
10 |
1 |
0 |
90.00% |
| src/driada/experiment/synthetic/time_series.py |
generate_fbm_time_series |
7 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/time_series.py |
select_signal_roi |
7 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/time_series.py |
discretize_via_roi |
5 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/time_series.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/synthetic/utils.py |
get_effective_decay_time |
6 |
3 |
0 |
50.00% |
| src/driada/experiment/synthetic/utils.py |
(no function) |
1 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_event_detection.py |
wvt_viz |
4 |
4 |
0 |
0.00% |
| src/driada/experiment/wavelet_event_detection.py |
get_cwt_ridges |
37 |
37 |
0 |
0.00% |
| src/driada/experiment/wavelet_event_detection.py |
get_cwt_ridges_fast |
28 |
28 |
0 |
0.00% |
| src/driada/experiment/wavelet_event_detection.py |
passing_criterion |
2 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_event_detection.py |
get_events_from_ridges |
4 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_event_detection.py |
events_from_trace |
10 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_event_detection.py |
extract_wvt_events |
21 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_event_detection.py |
events_to_ts_array_numba |
18 |
18 |
0 |
0.00% |
| src/driada/experiment/wavelet_event_detection.py |
events_to_ts_array |
5 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_event_detection.py |
(no function) |
27 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_ridge.py |
maxpos_numba |
2 |
2 |
0 |
0.00% |
| src/driada/experiment/wavelet_ridge.py |
Ridge.__init__ |
17 |
17 |
0 |
0.00% |
| src/driada/experiment/wavelet_ridge.py |
Ridge.extend |
6 |
6 |
0 |
0.00% |
| src/driada/experiment/wavelet_ridge.py |
Ridge.tip |
1 |
1 |
0 |
0.00% |
| src/driada/experiment/wavelet_ridge.py |
Ridge.terminate |
10 |
10 |
0 |
0.00% |
| src/driada/experiment/wavelet_ridge.py |
RidgeInfoContainer.__init__ |
12 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_ridge.py |
ridges_to_containers |
2 |
0 |
0 |
100.00% |
| src/driada/experiment/wavelet_ridge.py |
(no function) |
16 |
0 |
0 |
100.00% |
| src/driada/gdrive/auth.py |
desktop_auth |
4 |
4 |
0 |
0.00% |
| src/driada/gdrive/auth.py |
google_colab_auth |
6 |
6 |
0 |
0.00% |
| src/driada/gdrive/auth.py |
(no function) |
3 |
3 |
0 |
0.00% |
| src/driada/gdrive/download.py |
retrieve_relevant_ids |
23 |
5 |
0 |
78.26% |
| src/driada/gdrive/download.py |
download_part_of_folder |
23 |
14 |
0 |
39.13% |
| src/driada/gdrive/download.py |
download_gdrive_data |
32 |
32 |
0 |
0.00% |
| src/driada/gdrive/download.py |
initialize_iabs_router |
11 |
11 |
0 |
0.00% |
| src/driada/gdrive/download.py |
(no function) |
14 |
0 |
0 |
100.00% |
| src/driada/gdrive/gdrive_utils.py |
GoogleDriveFile.__init__ |
4 |
0 |
0 |
100.00% |
| src/driada/gdrive/gdrive_utils.py |
GoogleDriveFile.is_folder |
1 |
1 |
0 |
0.00% |
| src/driada/gdrive/gdrive_utils.py |
GoogleDriveFile.__repr__ |
0 |
0 |
7 |
100.00% |
| src/driada/gdrive/gdrive_utils.py |
parse_google_drive_file |
21 |
4 |
0 |
80.95% |
| src/driada/gdrive/gdrive_utils.py |
download_and_parse_google_drive_link |
25 |
25 |
0 |
0.00% |
| src/driada/gdrive/gdrive_utils.py |
id_from_link |
5 |
5 |
0 |
0.00% |
| src/driada/gdrive/gdrive_utils.py |
(no function) |
18 |
0 |
1 |
100.00% |
| src/driada/gdrive/upload.py |
get_datetime |
4 |
4 |
0 |
0.00% |
| src/driada/gdrive/upload.py |
save_file_to_gdrive |
25 |
25 |
0 |
0.00% |
| src/driada/gdrive/upload.py |
(no function) |
8 |
8 |
0 |
0.00% |
| src/driada/information/entropy.py |
entropy_d |
4 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
probs_to_entropy |
1 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
joint_entropy_dd |
3 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
conditional_entropy_cdd |
9 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
conditional_entropy_cd |
7 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
joint_entropy_cdd |
4 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
joint_entropy_cd |
4 |
0 |
0 |
100.00% |
| src/driada/information/entropy.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/information/entropy_jit.py |
entropy_d_jit |
13 |
13 |
0 |
0.00% |
| src/driada/information/entropy_jit.py |
joint_entropy_dd_jit |
24 |
24 |
0 |
0.00% |
| src/driada/information/entropy_jit.py |
(no function) |
6 |
6 |
0 |
0.00% |
| src/driada/information/gcmi.py |
ctransform |
9 |
0 |
0 |
100.00% |
| src/driada/information/gcmi.py |
copnorm |
7 |
0 |
0 |
100.00% |
| src/driada/information/gcmi.py |
demean |
6 |
6 |
0 |
0.00% |
| src/driada/information/gcmi.py |
regularized_cholesky |
10 |
10 |
0 |
0.00% |
| src/driada/information/gcmi.py |
ent_g |
18 |
18 |
0 |
0.00% |
| src/driada/information/gcmi.py |
mi_gg |
31 |
31 |
0 |
0.00% |
| src/driada/information/gcmi.py |
mi_model_gd |
42 |
42 |
0 |
0.00% |
| src/driada/information/gcmi.py |
gcmi_cc |
16 |
7 |
0 |
56.25% |
| src/driada/information/gcmi.py |
cmi_ggg |
46 |
3 |
0 |
93.48% |
| src/driada/information/gcmi.py |
gccmi_ccd |
40 |
4 |
0 |
90.00% |
| src/driada/information/gcmi.py |
(no function) |
26 |
2 |
0 |
92.31% |
| src/driada/information/gcmi_jit_utils.py |
ctransform_jit |
13 |
13 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
ctransform_2d_jit |
5 |
5 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
ndtri_approx |
27 |
27 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
copnorm_jit |
2 |
2 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
copnorm_2d_jit |
5 |
5 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
mi_gg_jit |
40 |
40 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
cmi_ggg_jit |
75 |
75 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
digamma_approx |
10 |
10 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
gcmi_cc_jit |
9 |
9 |
0 |
0.00% |
| src/driada/information/gcmi_jit_utils.py |
(no function) |
21 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
TimeSeries.define_ts_type |
13 |
3 |
0 |
76.92% |
| src/driada/information/info_base.py |
TimeSeries._check_input |
1 |
1 |
0 |
0.00% |
| src/driada/information/info_base.py |
TimeSeries.__init__ |
21 |
1 |
0 |
95.24% |
| src/driada/information/info_base.py |
TimeSeries.get_kdtree |
4 |
4 |
0 |
0.00% |
| src/driada/information/info_base.py |
TimeSeries._compute_kdtree |
2 |
2 |
0 |
0.00% |
| src/driada/information/info_base.py |
TimeSeries.get_kdtree_query |
4 |
4 |
0 |
0.00% |
| src/driada/information/info_base.py |
TimeSeries._compute_kdtree_query |
2 |
2 |
0 |
0.00% |
| src/driada/information/info_base.py |
TimeSeries.get_entropy |
3 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
TimeSeries._compute_entropy |
6 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
TimeSeries.filter |
7 |
7 |
0 |
0.00% |
| src/driada/information/info_base.py |
TimeSeries.approximate_entropy |
6 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
MultiTimeSeries.__init__ |
32 |
13 |
0 |
59.38% |
| src/driada/information/info_base.py |
MultiTimeSeries.shape |
1 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
MultiTimeSeries._check_input |
10 |
3 |
0 |
70.00% |
| src/driada/information/info_base.py |
MultiTimeSeries.get_entropy |
3 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
MultiTimeSeries._compute_entropy |
3 |
1 |
0 |
66.67% |
| src/driada/information/info_base.py |
MultiTimeSeries.filter |
3 |
3 |
0 |
0.00% |
| src/driada/information/info_base.py |
get_stats_function |
4 |
2 |
0 |
50.00% |
| src/driada/information/info_base.py |
calc_signal_ratio |
5 |
1 |
0 |
80.00% |
| src/driada/information/info_base.py |
get_sim |
29 |
12 |
0 |
58.62% |
| src/driada/information/info_base.py |
get_sim._check_input |
5 |
3 |
0 |
40.00% |
| src/driada/information/info_base.py |
get_mi |
16 |
0 |
1 |
100.00% |
| src/driada/information/info_base.py |
get_mi._check_input |
5 |
3 |
0 |
40.00% |
| src/driada/information/info_base.py |
get_mi.multi_single_mi |
16 |
7 |
1 |
56.25% |
| src/driada/information/info_base.py |
get_mi.multi_multi_mi |
10 |
2 |
2 |
80.00% |
| src/driada/information/info_base.py |
get_1d_mi |
57 |
16 |
0 |
71.93% |
| src/driada/information/info_base.py |
get_1d_mi._check_input |
5 |
3 |
0 |
40.00% |
| src/driada/information/info_base.py |
get_tdmi |
3 |
3 |
0 |
0.00% |
| src/driada/information/info_base.py |
get_multi_mi |
9 |
9 |
0 |
0.00% |
| src/driada/information/info_base.py |
aggregate_multiple_ts |
8 |
1 |
0 |
87.50% |
| src/driada/information/info_base.py |
conditional_mi |
41 |
1 |
0 |
97.56% |
| src/driada/information/info_base.py |
interaction_information |
8 |
0 |
0 |
100.00% |
| src/driada/information/info_base.py |
(no function) |
47 |
0 |
0 |
100.00% |
| src/driada/information/info_utils.py |
py_fast_digamma_arr |
11 |
11 |
0 |
0.00% |
| src/driada/information/info_utils.py |
py_fast_digamma |
9 |
9 |
0 |
0.00% |
| src/driada/information/info_utils.py |
binary_mi_score |
14 |
1 |
0 |
92.86% |
| src/driada/information/info_utils.py |
(no function) |
7 |
0 |
0 |
100.00% |
| src/driada/information/ksg.py |
add_noise |
1 |
0 |
0 |
100.00% |
| src/driada/information/ksg.py |
query_neighbors |
1 |
0 |
0 |
100.00% |
| src/driada/information/ksg.py |
_count_neighbors_single |
2 |
2 |
0 |
0.00% |
| src/driada/information/ksg.py |
count_neighbors |
1 |
1 |
0 |
0.00% |
| src/driada/information/ksg.py |
build_tree |
3 |
1 |
0 |
66.67% |
| src/driada/information/ksg.py |
avgdigamma |
12 |
12 |
0 |
0.00% |
| src/driada/information/ksg.py |
nonparam_entropy_c |
9 |
0 |
0 |
100.00% |
| src/driada/information/ksg.py |
nonparam_cond_entropy_cc |
4 |
4 |
0 |
0.00% |
| src/driada/information/ksg.py |
nonparam_mi_cc |
25 |
25 |
0 |
0.00% |
| src/driada/information/ksg.py |
lnc_correction |
13 |
13 |
0 |
0.00% |
| src/driada/information/ksg.py |
(no function) |
16 |
0 |
0 |
100.00% |
| src/driada/integration/selectivity_mapper.py |
SelectivityManifoldMapper.__init__ |
9 |
1 |
0 |
88.89% |
| src/driada/integration/selectivity_mapper.py |
SelectivityManifoldMapper.create_embedding |
43 |
13 |
0 |
69.77% |
| src/driada/integration/selectivity_mapper.py |
SelectivityManifoldMapper.analyze_embedding_selectivity |
2 |
0 |
0 |
100.00% |
| src/driada/integration/selectivity_mapper.py |
SelectivityManifoldMapper.get_functional_organization |
34 |
8 |
0 |
76.47% |
| src/driada/integration/selectivity_mapper.py |
SelectivityManifoldMapper.compare_embeddings |
21 |
15 |
0 |
28.57% |
| src/driada/integration/selectivity_mapper.py |
(no function) |
14 |
0 |
0 |
100.00% |
| src/driada/intense/disentanglement.py |
disentangle_pair |
43 |
3 |
0 |
93.02% |
| src/driada/intense/disentanglement.py |
disentangle_all_selectivities |
56 |
40 |
0 |
28.57% |
| src/driada/intense/disentanglement.py |
create_multifeature_map |
8 |
0 |
0 |
100.00% |
| src/driada/intense/disentanglement.py |
get_disentanglement_summary |
33 |
1 |
0 |
96.97% |
| src/driada/intense/disentanglement.py |
(no function) |
8 |
0 |
0 |
100.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.__init__ |
5 |
5 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.generate_test_data |
13 |
13 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator._extract_shuffle_distributions |
28 |
28 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator._calculate_statistical_properties |
25 |
25 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.fit_distributions |
25 |
25 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.analyze_all_distributions |
11 |
11 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.compare_detection_performance |
25 |
25 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.generate_summary_report |
54 |
54 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
MIDistributionInvestigator.create_visualizations |
70 |
70 |
0 |
0.00% |
| src/driada/intense/distribution_investigation.py |
(no function) |
41 |
41 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
empirical_p_value |
14 |
14 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
adaptive_distribution_test |
55 |
55 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
robust_parametric_test |
21 |
21 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
extreme_value_correction |
20 |
20 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
bootstrap_p_value_confidence |
11 |
11 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
ImprovedMITesting.__init__ |
3 |
3 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
ImprovedMITesting.compute_p_value |
31 |
31 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
compare_testing_methods |
26 |
26 |
0 |
0.00% |
| src/driada/intense/improved_mi_testing.py |
(no function) |
14 |
14 |
0 |
0.00% |
| src/driada/intense/intense_base.py |
validate_time_series_bunches |
23 |
7 |
0 |
69.57% |
| src/driada/intense/intense_base.py |
validate_metric |
18 |
2 |
0 |
88.89% |
| src/driada/intense/intense_base.py |
validate_common_parameters |
8 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
calculate_optimal_delays |
16 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
calculate_optimal_delays_parallel |
15 |
1 |
0 |
93.33% |
| src/driada/intense/intense_base.py |
get_calcium_feature_me_profile |
42 |
8 |
0 |
80.95% |
| src/driada/intense/intense_base.py |
scan_pairs |
65 |
21 |
0 |
67.69% |
| src/driada/intense/intense_base.py |
scan_pairs_parallel |
25 |
1 |
0 |
96.00% |
| src/driada/intense/intense_base.py |
scan_pairs_router |
4 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
IntenseResults.__init__ |
1 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
IntenseResults.update |
1 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
IntenseResults.update_multiple |
2 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
IntenseResults.save_to_hdf5 |
2 |
0 |
0 |
100.00% |
| src/driada/intense/intense_base.py |
compute_me_stats |
131 |
8 |
0 |
93.89% |
| src/driada/intense/intense_base.py |
get_multicomp_correction_thr |
29 |
4 |
0 |
86.21% |
| src/driada/intense/intense_base.py |
(no function) |
24 |
0 |
0 |
100.00% |
| src/driada/intense/pipelines.py |
compute_cell_feat_significance |
100 |
30 |
0 |
70.00% |
| src/driada/intense/pipelines.py |
compute_feat_feat_significance |
57 |
10 |
0 |
82.46% |
| src/driada/intense/pipelines.py |
compute_cell_cell_significance |
60 |
17 |
0 |
71.67% |
| src/driada/intense/pipelines.py |
compute_embedding_selectivity |
58 |
14 |
0 |
75.86% |
| src/driada/intense/pipelines.py |
(no function) |
8 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
chebyshev_ineq |
2 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_lognormal_p |
3 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_gamma_p |
3 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_distribution_function |
4 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_mi_distr_pvalue |
6 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_mask |
4 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
stats_not_empty |
9 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
criterion1 |
3 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
criterion2 |
6 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_all_nonempty_pvals |
7 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
get_table_of_stats |
26 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
merge_stage_stats |
9 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
merge_stage_significance |
5 |
0 |
0 |
100.00% |
| src/driada/intense/stats.py |
(no function) |
18 |
0 |
0 |
100.00% |
| src/driada/intense/visual.py |
plot_pc_activity |
18 |
0 |
0 |
100.00% |
| src/driada/intense/visual.py |
plot_neuron_feature_density |
37 |
3 |
1 |
91.89% |
| src/driada/intense/visual.py |
plot_neuron_feature_pair |
34 |
4 |
0 |
88.24% |
| src/driada/intense/visual.py |
plot_disentanglement_heatmap |
26 |
0 |
0 |
100.00% |
| src/driada/intense/visual.py |
plot_disentanglement_summary |
52 |
0 |
0 |
100.00% |
| src/driada/intense/visual.py |
plot_selectivity_heatmap |
57 |
0 |
0 |
100.00% |
| src/driada/intense/visual.py |
(no function) |
12 |
0 |
0 |
100.00% |
| src/driada/network/drawing.py |
draw_degree_distr |
30 |
30 |
0 |
0.00% |
| src/driada/network/drawing.py |
draw_spectrum |
9 |
9 |
0 |
0.00% |
| src/driada/network/drawing.py |
get_vector_coloring |
4 |
4 |
0 |
0.00% |
| src/driada/network/drawing.py |
draw_eigenvectors |
31 |
31 |
0 |
0.00% |
| src/driada/network/drawing.py |
draw_net |
13 |
13 |
0 |
0.00% |
| src/driada/network/drawing.py |
show_mat |
11 |
11 |
0 |
0.00% |
| src/driada/network/drawing.py |
plot_lem_embedding |
19 |
19 |
0 |
0.00% |
| src/driada/network/drawing.py |
(no function) |
16 |
0 |
0 |
100.00% |
| src/driada/network/graph_utils.py |
get_giant_cc_from_graph |
3 |
0 |
0 |
100.00% |
| src/driada/network/graph_utils.py |
get_giant_scc_from_graph |
5 |
1 |
0 |
80.00% |
| src/driada/network/graph_utils.py |
remove_selfloops_from_graph |
3 |
0 |
0 |
100.00% |
| src/driada/network/graph_utils.py |
remove_isolates_and_selfloops_from_graph |
4 |
0 |
0 |
100.00% |
| src/driada/network/graph_utils.py |
remove_isolates_from_graph |
3 |
3 |
0 |
0.00% |
| src/driada/network/graph_utils.py |
small_world_index |
18 |
18 |
0 |
0.00% |
| src/driada/network/graph_utils.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
_plain_bfs |
14 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_neighbors_from_adj |
2 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_ccs_from_adj |
6 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_sccs_from_adj |
37 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_giant_cc_from_adj |
5 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_giant_scc_from_adj |
5 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
assign_random_weights |
3 |
3 |
0 |
0.00% |
| src/driada/network/matrix_utils.py |
turn_to_partially_directed |
26 |
2 |
0 |
92.31% |
| src/driada/network/matrix_utils.py |
get_symmetry_index |
6 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
symmetric_component |
5 |
5 |
0 |
0.00% |
| src/driada/network/matrix_utils.py |
non_symmetric_component |
1 |
1 |
0 |
0.00% |
| src/driada/network/matrix_utils.py |
remove_duplicates |
3 |
3 |
0 |
0.00% |
| src/driada/network/matrix_utils.py |
adj_input_to_csr_sparse_matrix |
8 |
4 |
0 |
50.00% |
| src/driada/network/matrix_utils.py |
remove_selfloops_from_adj |
7 |
5 |
0 |
28.57% |
| src/driada/network/matrix_utils.py |
remove_isolates_from_adj |
7 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
sausage_index |
8 |
8 |
0 |
0.00% |
| src/driada/network/matrix_utils.py |
get_laplacian |
5 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_inv_sqrt_diag_matrix |
7 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_norm_laplacian |
7 |
1 |
0 |
85.71% |
| src/driada/network/matrix_utils.py |
get_inv_diag_matrix |
7 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_rw_laplacian |
4 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
get_trans_matrix |
4 |
0 |
0 |
100.00% |
| src/driada/network/matrix_utils.py |
(no function) |
25 |
0 |
0 |
100.00% |
| src/driada/network/net_base.py |
check_matrix_type |
6 |
3 |
0 |
50.00% |
| src/driada/network/net_base.py |
check_adjacency |
2 |
2 |
0 |
0.00% |
| src/driada/network/net_base.py |
check_directed |
5 |
3 |
0 |
40.00% |
| src/driada/network/net_base.py |
check_weights_and_directions |
8 |
8 |
0 |
0.00% |
| src/driada/network/net_base.py |
select_construction_pipeline |
10 |
3 |
0 |
70.00% |
| src/driada/network/net_base.py |
Network.__init__ |
34 |
0 |
0 |
100.00% |
| src/driada/network/net_base.py |
Network._preprocess_graph_and_data |
29 |
6 |
0 |
79.31% |
| src/driada/network/net_base.py |
Network._preprocess_adj_and_data |
40 |
12 |
0 |
70.00% |
| src/driada/network/net_base.py |
Network.is_connected |
2 |
0 |
0 |
100.00% |
| src/driada/network/net_base.py |
Network.randomize |
15 |
15 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.get_node_degrees |
13 |
0 |
0 |
100.00% |
| src/driada/network/net_base.py |
Network.get_degree_distr |
9 |
9 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.get_matrix |
17 |
3 |
0 |
82.35% |
| src/driada/network/net_base.py |
Network.get_spectrum |
6 |
6 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.get_eigenvectors |
6 |
6 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.get_ipr |
6 |
6 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.get_z_values |
6 |
6 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.partial_diagonalize |
1 |
1 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.diagonalize |
48 |
15 |
0 |
68.75% |
| src/driada/network/net_base.py |
Network.calculate_z_values |
15 |
15 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.calculate_ipr |
8 |
8 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network._get_lap_spectrum |
7 |
7 |
1 |
0.00% |
| src/driada/network/net_base.py |
Network.calculate_thermodynamic_entropy |
3 |
3 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.calculate_free_entropy |
3 |
3 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.calculate_q_entropy |
3 |
3 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.calculate_estrada_communicability |
3 |
3 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.get_estrada_bipartivity_index |
5 |
5 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.localization_signatures |
8 |
8 |
0 |
0.00% |
| src/driada/network/net_base.py |
Network.construct_lem_embedding |
18 |
18 |
0 |
0.00% |
| src/driada/network/net_base.py |
(no function) |
43 |
0 |
0 |
100.00% |
| src/driada/network/quantum.py |
renyi_divergence |
6 |
6 |
0 |
0.00% |
| src/driada/network/quantum.py |
get_density_matrix |
7 |
7 |
0 |
0.00% |
| src/driada/network/quantum.py |
manual_entropy |
3 |
3 |
0 |
0.00% |
| src/driada/network/quantum.py |
js_divergence |
15 |
15 |
0 |
0.00% |
| src/driada/network/quantum.py |
(no function) |
8 |
0 |
0 |
100.00% |
| src/driada/network/randomization.py |
adj_random_rewiring_iom_preserving |
62 |
62 |
0 |
0.00% |
| src/driada/network/randomization.py |
random_rewiring_complete_graph |
24 |
24 |
0 |
0.00% |
| src/driada/network/randomization.py |
random_rewiring_dense_graph |
16 |
16 |
0 |
0.00% |
| src/driada/network/randomization.py |
get_single_double_edges_lists |
10 |
10 |
0 |
0.00% |
| src/driada/network/randomization.py |
random_rewiring_IOM_preserving |
111 |
111 |
0 |
0.00% |
| src/driada/network/randomization.py |
(no function) |
9 |
0 |
0 |
100.00% |
| src/driada/network/spectral.py |
free_entropy |
3 |
3 |
0 |
0.00% |
| src/driada/network/spectral.py |
q_entropy |
10 |
10 |
0 |
0.00% |
| src/driada/network/spectral.py |
spectral_entropy |
13 |
13 |
0 |
0.00% |
| src/driada/network/spectral.py |
(no function) |
4 |
0 |
0 |
100.00% |
| src/driada/signals.py |
(no function) |
6 |
6 |
0 |
0.00% |
| src/driada/utils/data.py |
create_correlated_gaussian_data |
12 |
2 |
0 |
83.33% |
| src/driada/utils/data.py |
populate_nested_dict |
4 |
0 |
0 |
100.00% |
| src/driada/utils/data.py |
nested_dict_to_seq_of_tables |
16 |
2 |
0 |
87.50% |
| src/driada/utils/data.py |
add_names_to_nested_dict |
13 |
2 |
0 |
84.62% |
| src/driada/utils/data.py |
retrieve_relevant_from_nested_dict |
16 |
6 |
0 |
62.50% |
| src/driada/utils/data.py |
rescale |
3 |
0 |
0 |
100.00% |
| src/driada/utils/data.py |
get_hash |
3 |
0 |
0 |
100.00% |
| src/driada/utils/data.py |
phase_synchrony |
4 |
4 |
0 |
0.00% |
| src/driada/utils/data.py |
correlation_matrix_old |
9 |
9 |
0 |
0.00% |
| src/driada/utils/data.py |
correlation_matrix |
2 |
0 |
0 |
100.00% |
| src/driada/utils/data.py |
cross_correlation_matrix |
3 |
3 |
0 |
0.00% |
| src/driada/utils/data.py |
norm_cross_corr |
4 |
4 |
0 |
0.00% |
| src/driada/utils/data.py |
to_numpy_array |
5 |
3 |
0 |
40.00% |
| src/driada/utils/data.py |
write_dict_to_hdf5 |
11 |
2 |
0 |
81.82% |
| src/driada/utils/data.py |
read_hdf5_to_dict |
3 |
0 |
0 |
100.00% |
| src/driada/utils/data.py |
read_hdf5_to_dict._read_group |
10 |
3 |
0 |
70.00% |
| src/driada/utils/data.py |
(no function) |
23 |
0 |
0 |
100.00% |
| src/driada/utils/gif.py |
erase_all |
4 |
4 |
0 |
0.00% |
| src/driada/utils/gif.py |
save_image_series |
5 |
5 |
0 |
0.00% |
| src/driada/utils/gif.py |
create_gif_from_image_series |
8 |
8 |
0 |
0.00% |
| src/driada/utils/gif.py |
(no function) |
10 |
0 |
0 |
100.00% |
| src/driada/utils/matrix.py |
nearestPD |
15 |
15 |
0 |
0.00% |
| src/driada/utils/matrix.py |
isPD |
5 |
5 |
0 |
0.00% |
| src/driada/utils/matrix.py |
(no function) |
4 |
0 |
0 |
100.00% |
| src/driada/utils/naming.py |
construct_session_name |
25 |
25 |
1 |
0.00% |
| src/driada/utils/naming.py |
(no function) |
1 |
0 |
0 |
100.00% |
| src/driada/utils/neural.py |
generate_pseudo_calcium_signal |
12 |
0 |
0 |
100.00% |
| src/driada/utils/neural.py |
generate_pseudo_calcium_multisignal |
5 |
0 |
0 |
100.00% |
| src/driada/utils/neural.py |
(no function) |
3 |
0 |
0 |
100.00% |
| src/driada/utils/output.py |
Capturing.__enter__ |
3 |
0 |
0 |
100.00% |
| src/driada/utils/output.py |
Capturing.__exit__ |
3 |
0 |
0 |
100.00% |
| src/driada/utils/output.py |
show_output |
4 |
4 |
0 |
0.00% |
| src/driada/utils/output.py |
(no function) |
6 |
0 |
0 |
100.00% |
| src/driada/utils/plot.py |
make_beautiful |
12 |
0 |
0 |
100.00% |
| src/driada/utils/plot.py |
create_default_figure |
3 |
0 |
0 |
100.00% |
| src/driada/utils/plot.py |
plot_mat |
6 |
6 |
0 |
0.00% |
| src/driada/utils/plot.py |
(no function) |
5 |
0 |
0 |
100.00% |
| src/driada/utils/repo.py |
clone_org_repo |
1 |
1 |
0 |
0.00% |
| src/driada/utils/repo.py |
reload_module |
7 |
7 |
0 |
0.00% |
| src/driada/utils/repo.py |
import_external_repositories |
16 |
16 |
0 |
0.00% |
| src/driada/utils/repo.py |
(no function) |
9 |
0 |
0 |
100.00% |
| src/driada/utils/signals.py |
brownian |
7 |
0 |
0 |
100.00% |
| src/driada/utils/signals.py |
approximate_entropy |
4 |
0 |
0 |
100.00% |
| src/driada/utils/signals.py |
approximate_entropy._maxdist |
1 |
0 |
0 |
100.00% |
| src/driada/utils/signals.py |
approximate_entropy._phi |
3 |
0 |
0 |
100.00% |
| src/driada/utils/signals.py |
filter_1d_timeseries |
39 |
28 |
0 |
28.21% |
| src/driada/utils/signals.py |
filter_signals |
6 |
1 |
0 |
83.33% |
| src/driada/utils/signals.py |
adaptive_filter_signals |
11 |
0 |
0 |
100.00% |
| src/driada/utils/signals.py |
(no function) |
11 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
compute_occupancy_map |
14 |
1 |
0 |
92.86% |
| src/driada/utils/spatial.py |
compute_rate_map |
16 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
extract_place_fields |
20 |
1 |
0 |
95.00% |
| src/driada/utils/spatial.py |
compute_spatial_information_rate |
12 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
compute_grid_score |
19 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
compute_spatial_decoding_accuracy |
15 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
compute_spatial_information |
29 |
9 |
0 |
68.97% |
| src/driada/utils/spatial.py |
filter_by_speed |
14 |
1 |
0 |
92.86% |
| src/driada/utils/spatial.py |
filter_by_direction |
15 |
2 |
0 |
86.67% |
| src/driada/utils/spatial.py |
analyze_spatial_coding |
24 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
compute_spatial_metrics |
16 |
0 |
0 |
100.00% |
| src/driada/utils/spatial.py |
(no function) |
20 |
0 |
0 |
100.00% |
| src/driada/utils/visual.py |
plot_embedding_comparison |
83 |
5 |
0 |
93.98% |
| src/driada/utils/visual.py |
plot_trajectories |
37 |
3 |
0 |
91.89% |
| src/driada/utils/visual.py |
plot_component_interpretation |
47 |
6 |
0 |
87.23% |
| src/driada/utils/visual.py |
plot_embeddings_grid |
57 |
19 |
0 |
66.67% |
| src/driada/utils/visual.py |
plot_neuron_selectivity_summary |
19 |
1 |
0 |
94.74% |
| src/driada/utils/visual.py |
plot_component_selectivity_heatmap |
28 |
5 |
0 |
82.14% |
| src/driada/utils/visual.py |
(no function) |
14 |
0 |
0 |
100.00% |