numpy>=1.21.0
pandas>=1.3.0
scipy>=1.13.0
scikit-learn>=1.0.0
matplotlib>=3.4.0
seaborn>=0.11.0
pybaselines>=1.0.0
gudhi>=3.5.0
tslearn>=0.6.0
pyyaml>=6.0
pyarrow>=14.0.0
typer>=0.9.0
rich>=13.0.0

[all]
pyteomics>=4.5
lxml>=4.9.0
umap-learn>=0.5
combatlearn>=1.3

[batch]
umap-learn>=0.5
combatlearn>=1.3

[dev]
pytest>=7.0.0
pytest-cov>=4.0.0
ruff>=0.1.0

[docs]
sphinx>=7.0.0
pydata-sphinx-theme>=0.15.0
sphinx-autodoc-typehints>=2.0.0
sphinx-design>=0.6.0
nbsphinx>=0.9.0
ipykernel>=6.0.0

[formats]
pyteomics>=4.0
lxml>=4.0
