LICENSE
README.md
pyproject.toml
src/agentomics/__init__.py
src/agentomics/run_agent.py
src/agentomics/run_agent_interactive.py
src/agentomics.egg-info/PKG-INFO
src/agentomics.egg-info/SOURCES.txt
src/agentomics.egg-info/dependency_links.txt
src/agentomics.egg-info/entry_points.txt
src/agentomics.egg-info/requires.txt
src/agentomics.egg-info/top_level.txt
src/agentomics/cli/__init__.py
src/agentomics/cli/check_dataset.py
src/agentomics/cli/docker_utils.py
src/agentomics/cli/download_dataset.py
src/agentomics/cli/inference.py
src/agentomics/cli/retrain.py
src/agentomics/cli/run.py
src/agentomics/cli/run_arguments.py
src/agentomics/datasets/__init__.py
src/agentomics/datasets/create_datasets.py
src/agentomics/datasets/csv_converter.py
src/agentomics/datasets/data_contract.py
src/agentomics/datasets/dataset_preparation.py
src/agentomics/datasets/datasets_interactive.py
src/agentomics/datasets/label_processing.py
src/agentomics/runtime/__init__.py
src/agentomics/runtime/best_iteration_snapshot.py
src/agentomics/runtime/conda_utils.py
src/agentomics/runtime/evaluate.py
src/agentomics/runtime/evaluate_result.py
src/agentomics/runtime/filesystem.py
src/agentomics/runtime/generate_final_reports.py
src/agentomics/runtime/git_checkpoints.py
src/agentomics/runtime/inference_runner.py
src/agentomics/runtime/inference_workflow.py
src/agentomics/runtime/iteration_reports.py
src/agentomics/runtime/read_write_utils.py
src/agentomics/runtime/report_workflow.py
src/agentomics/runtime/run_lifecycle.py
src/agentomics/runtime/run_workflow.py
src/agentomics/runtime/setup_fork.py
src/agentomics/runtime/step_outputs.py
src/agentomics/runtime/system_resources.py
src/agentomics/runtime/training_workflow.py
src/agentomics/utils/__init__.py
src/agentomics/utils/agent_id.py
src/agentomics/utils/api_keys.py
src/agentomics/utils/config.py
src/agentomics/utils/exceptions.py
src/agentomics/utils/metrics.py
src/agentomics/utils/metrics_interactive.py
src/agentomics/utils/printing_utils.py
src/agentomics/utils/task_types.py
src/agentomics/utils/text_processing_utils.py
src/agentomics/utils/user_input.py
src/agentomics/utils/versioning.py
test/test_agent_permissions.py
test/test_bash_lines_collapsing.py
test/test_best_iteration_snapshot_and_splits.py
test/test_codex_provider.py
test/test_csv_converter.py
test/test_dataset_extras_and_input_structure.py
test/test_dataset_folder_split_contracts.py
test/test_dataset_preparation_publishing.py
test/test_environment_recreation.py
test/test_forking.py
test/test_gpu_access.py
test/test_pydantic_ai_validators.py
test/test_replace_tool.py
test/test_retry_transport.py
test/test_run_launcher_container_contract.py
test/test_runtime_lifecycle.py
test/test_utils.py