Command: FastTreeMP -nt -gtr -log fastree_dna_stats.txt
FastTree Version 2.1.3 SSE3, OpenMP (12 threads)
Alignment: standard input
Nucleotide distances: Jukes-Cantor Joins: balanced Support: SH-like 1000
Search: Normal +NNI +SPR (2 rounds range 10) +ML-NNI opt-each=1
TopHits: 1.00*sqrtN close=default refresh=0.80
ML Model: Generalized Time-Reversible, CAT approximation with 20 rate categories
Read 46 sequences, 1707 positions
NJ	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,(((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,(4Vag-18:-0.01271,((S000414529:0.02882,S001792807:0.00754):0.01164,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S001093459:0.00133,(S000014487:-0.00010,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
ME_NNI1	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,((((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,((S000414529:0.02882,S001792807:0.00754):0.01164,(4Vag-18:-0.01271,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S000014487:-0.00010,(S001093459:0.00133,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
ME_NNI2	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,((((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,((S000414529:0.02882,S001792807:0.00754):0.01164,(4Vag-18:-0.01271,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S000014487:-0.00010,(S001093459:0.00133,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
Min_evolution NNIs converged at round 2 -- skipping some rounds
ME_SPR1	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,((((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,((S000414529:0.02882,S001792807:0.00754):0.01164,(4Vag-18:-0.01271,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S000014487:-0.00010,(S001093459:0.00133,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
ME_NNI8	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,((((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,((S000414529:0.02882,S001792807:0.00754):0.01164,(4Vag-18:-0.01271,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S000014487:-0.00010,(S001093459:0.00133,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
Min_evolution NNIs converged at round 8 -- skipping some rounds
ME_SPR2	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,((((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,((S000414529:0.02882,S001792807:0.00754):0.01164,(4Vag-18:-0.01271,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S000014487:-0.00010,(S001093459:0.00133,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
ME_NNI15	((S000444202:0.00009,S001016013:-0.00009):0.00822,(S000608874:0.00148,S001418075:-0.00013):0.00687,((S000390171:0.00013,S001793756:-0.00013):0.00650,((S002355764:0.01427,((((S000431102:0.00517,S001330257:0.00159):0.03661,((S000608871:0.01246,S001792815:0.00960):0.02386,((S000414529:0.02882,S001792807:0.00754):0.01164,(4Vag-18:-0.01271,(S000389919:0.01395,S000473522:0.01882):0.00644):0.00030):0.01290):0.00675):0.01354,((S000004313:0.00676,S000727873:-0.00360):0.17179,(((S000870727:0.00103,S001792816:0.00234):0.03472,(S000927167:0.00100,S001168699:0.00188):0.02821):0.02153,(((S000395052:0.00349,(S000014487:-0.00010,(S001093459:0.00133,S001264844:0.00010):0.00005):0.00470):0.00440,(S002166047:0.01145,S002227682:0.00644):0.00259):0.03379,(((S001153625:0.00163,S002227570:-0.00095):0.01650,(S000483388:-0.00012,S002152884:0.00078):0.01412):0.01882,((S001198995:0.00700,S002227370:0.00197):0.03412,(S000495656:0.00178,S000824731:0.00705):0.02968):0.00390):0.00751):0.00329):0.01030):0.00553):0.02223,((123f3-34:-0.02005,S000389918:0.02116):0.01843,((136b-31:-0.01997,S001910616:0.01997):0.02272,((S000995983:-0.00110,S001264834:0.00542):0.00125,(S000008742:0.00198,S002165654:0.00432):0.00081):0.01841):0.01318):0.00423):0.02106):0.01135,(S000473523:0.00083,S002355760:0.00050):0.00965):-0.00012):0.00114);
Min_evolution NNIs converged at round 15 -- skipping some rounds
ME_Lengths	((S000444202:0.00011,S001016013:-0.00011):0.00826,(S000608874:0.00152,S001418075:-0.00018):0.00699,((S000390171:-0.00000,S001793756:0.00000):0.00671,((S002355764:0.01420,((((S000431102:0.00557,S001330257:0.00122):0.03857,((S000608871:0.01435,S001792815:0.00804):0.02271,((S000414529:0.03169,S001792807:0.00558):0.01060,(4Vag-18:-0.01199,(S000389919:0.01267,S000473522:0.02084):0.00532):0.00249):0.00968):0.00736):0.01996,((S000004313:0.00872,S000727873:-0.00556):0.21360,(((S000870727:0.00106,S001792816:0.00232):0.03651,(S000927167:0.00123,S001168699:0.00165):0.02950):0.02309,(((S000395052:0.00389,(S000014487:-0.00027,(S001093459:0.00136,S001264844:0.00002):0.00027):0.00428):0.00420,(S002166047:0.00940,S002227682:0.00872):0.00306):0.03862,(((S001153625:0.00209,S002227570:-0.00140):0.01540,(S000483388:0.00065,S002152884:0.00002):0.01588):0.01858,((S001198995:0.00778,S002227370:0.00125):0.03860,(S000495656:0.00147,S000824731:0.00741):0.02894):0.00596):0.00622):0.00498):0.00576):0.00608):0.02763,((123f3-34:-0.01670,S000389918:0.01781):0.01733,((136b-31:-0.01528,S001910616:0.01528):0.01680,((S000995983:0.00033,S001264834:0.00400):0.00112,(S000008742:0.00219,S002165654:0.00414):0.00096):0.01996):0.01220):0.00380):0.01824):0.01504,(S000473523:0.00088,S002355760:0.00045):0.01028):0.00081):0.00142);
Total branch-length 1.055 after 1.36 sec
ML_Lengths1	((S000444202:0.00011,S001016013:0.00014):0.00895,(S000608874:0.00141,S001418075:0.00014):0.00701,((S000390171:0.00014,S001793756:0.00014):0.00564,((S002355764:0.02055,((((S000431102:0.00729,S001330257:0.00014):0.04361,((S000608871:0.01624,S001792815:0.00660):0.02324,((S000414529:0.03444,S001792807:0.00222):0.00975,(4Vag-18:0.00139,(S000389919:0.00865,S000473522:0.02476):0.00618):0.01036):0.01622):0.01225):0.02807,((S000004313:0.00309,S000727873:0.00014):0.24848,(((S000870727:0.00133,S001792816:0.00203):0.03167,(S000927167:0.00014,S001168699:0.00286):0.03509):0.03683,(((S000395052:0.00398,(S000014487:0.00014,(S001093459:0.00138,S001264844:0.00014):0.00014):0.00397):0.00459,(S002166047:0.01030,S002227682:0.00994):0.00473):0.04938,(((S001153625:0.00086,S002227570:0.00014):0.01747,(S000483388:0.00067,S002152884:0.00014):0.01599):0.01892,((S001198995:0.00913,S002227370:0.00014):0.04354,(S000495656:0.00108,S000824731:0.00769):0.02836):0.01402):0.01223):0.01366):0.01208):0.01745):0.05092,((123f3-34:0.00014,S000389918:0.00246):0.03226,((136b-31:0.00014,S001910616:0.00016):0.03801,((S000995983:0.00210,S001264834:0.00266):0.00077,(S000008742:0.00080,S002165654:0.00563):0.00281):0.01020):0.02430):0.01120):0.03626):0.01291,(S000473523:0.00065,S002355760:0.00066):0.01146):0.00251):0.00301);
ML_NNI1	((S000444202:0.00011,S001016013:0.00014):0.00861,(S000608874:0.00150,S001418075:0.00014):0.00706,((S002355764:0.01902,((123f3-34:0.00014,S000389918:0.00219):0.02790,((((S000431102:0.00695,S001330257:0.00014):0.03511,((S000608871:0.01691,S001792815:0.00577):0.02512,((S000414529:0.03450,S001792807:0.00241):0.00919,(4Vag-18:0.00164,(S000389919:0.00846,S000473522:0.02490):0.00278):0.01298):0.01586):0.01924):0.02761,((((S000870727:0.00133,S001792816:0.00203):0.03345,(S000927167:0.00014,S001168699:0.00293):0.03420):0.04130,(((S001153625:0.00089,S002227570:0.00014):0.01827,(S000483388:0.00065,S002152884:0.00014):0.01515):0.01759,((S001198995:0.00911,S002227370:0.00014):0.04487,(S000495656:0.00122,S000824731:0.00754):0.02749):0.01506):0.01032):0.01313,(((S000395052:0.00443,(S000014487:0.00014,(S001093459:0.00139,S001264844:0.00014):0.00014):0.00353):0.00476,(S002166047:0.01001,S002227682:0.01006):0.00458):0.03383,(S000004313:0.00314,S000727873:0.00014):0.25275):0.01914):0.02189):0.04989,((136b-31:0.00014,S001910616:0.00016):0.03868,((S000995983:0.00210,S001264834:0.00391):0.00015,(S000008742:0.00078,S002165654:0.00563):0.00307):0.00976):0.01488):0.01726):0.03715):0.01662,((S000390171:0.00014,S001793756:0.00014):0.00502,(S000473523:0.00065,S002355760:0.00066):0.01267):0.00187):0.00228);
TreeLogLk	ML_NNI1	-11665.5906	MaxChange	31.6387
GTRFreq	0.2587	0.2256	0.3024	0.2133
GTRRates	0.8264	1.8912	1.4559	0.4619	3.1369	1.0000
NCategories	20
Rates 0.067666 0.092752 0.127137 0.174270 0.238877 0.327434 0.448823 0.615213 0.843288 1.155916 1.584444 2.171838 2.976994 4.080641 5.593440 7.667071 10.509451 14.405574 19.746088 27.066469
SiteCategories 9 9 9 10 10 9 10 9 10 8 9 8 8 8 9 8 8 11 10 8 8 8 8 8 8 8 8 10 10 11 8 10 10 10 8 8 9 10 8 8 10 9 8 9 11 9 8 8 12 8 9 9 9 9 9 8 11 9 9 9 9 8 9 8 8 8 8 8 8 8 8 8 8 8 8 9 10 9 8 11 12 13 13 13 13 13 11 12 13 14 13 13 13 13 13 14 13 14 14 13 13 11 11 10 9 9 9 11 12 12 13 13 14 12 14 14 13 13 13 13 12 13 14 13 13 12 13 13 14 13 12 12 11 11 8 8 10 8 8 8 8 11 8 9 10 8 8 8 8 8 8 8 8 8 9 10 9 10 8 11 8 8 13 8 8 10 9 8 8 8 8 10 13 9 13 12 9 8 13 12 10 8 8 10 8 10 8 9 8 9 12 11 8 8 8 8 8 8 8 9 10 13 9 8 8 8 8 8 8 8 8 8 8 12 8 8 8 10 12 12 12 11 13 12 13 13 13 13 10 12 8 11 9 10 13 13 13 13 13 14 12 13 13 8 14 8 8 8 8 10 12 8 8 13 10 11 9 9 9 9 10 10 13 12 10 8 8 12 8 9 12 8 9 12 12 13 10 8 8 8 8 11 13 8 10 12 10 11 10 11 11 8 10 8 8 9 8 8 10 9 8 12 8 9 9 8 8 8 12 13 10 8 8 8 8 13 8 8 8 13 12 8 8 9 8 9 9 10 10 9 9 14 9 10 8 8 8 11 8 11 8 8 8 8 9 8 9 11 9 8 8 8 8 8 8 10 11 8 10 8 9 8 10 8 8 9 8 8 8 10 8 8 9 8 11 8 8 8 8 8 8 8 8 8 8 8 8 12 8 8 8 10 8 9 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 10 8 8 10 8 8 8 8 8 8 8 8 11 8 8 13 8 8 8 11 8 8 8 8 8 8 10 8 10 8 10 8 10 10 8 8 8 8 8 8 10 9 11 8 10 8 10 10 8 8 8 8 12 10 8 8 8 8 9 9 9 8 12 8 10 8 8 8 8 8 12 10 9 8 8 10 8 9 10 10 10 12 11 10 8 8 9 8 8 8 12 12 13 13 13 12 12 12 9 10 9 10 9 10 9 11 11 11 12 9 13 12 13 13 13 13 12 9 10 8 8 8 10 8 8 10 11 12 10 10 11 11 8 10 10 8 8 8 10 10 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 9 10 8 8 9 8 8 8 8 8 8 11 9 9 8 8 8 8 9 8 9 8 8 9 8 8 8 8 8 8 8 8 8 8 8 10 8 10 11 10 8 8 8 10 8 8 8 8 10 11 12 12 11 8 8 11 8 8 8 9 10 8 8 8 8 8 9 8 8 11 8 8 10 9 10 8 8 8 8 12 8 8 8 8 10 13 11 8 9 8 12 11 8 8 8 8 9 11 8 8 9 8 8 10 8 10 13 9 12 12 11 8 8 8 8 8 8 8 11 9 10 10 10 8 8 8 10 9 8 10 12 9 8 8 10 9 8 8 8 10 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 9 8 8 8 8 9 9 9 9 9 9 9 8 8 10 8 8 8 9 10 8 8 8 9 10 8 8 8 11 10 9 8 8 8 8 8 8 8 11 8 8 8 11 8 9 12 10 8 8 11 8 10 9 9 10 12 10 8 8 8 8 8 8 8 8 8 10 8 10 10 10 9 8 8 8 8 8 8 9 10 8 8 8 8 9 8 8 8 11 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 9 8 8 8 11 10 8 8 8 8 8 8 8 8 8 8 8 8 9 12 9 10 8 9 9 9 12 8 9 8 9 8 10 8 10 10 10 10 10 8 8 9 9 9 10 11 10 11 10 10 9 10 9 10 8 10 8 11 10 11 9 10 8 8 8 8 8 8 8 9 9 8 8 8 10 8 9 10 12 9 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 11 9 8 9 8 8 8 8 8 10 10 8 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 10 8 8 8 8 8 8 8 8 8 8 8 9 9 9 8 8 8 9 10 8 8 8 8 8 8 8 8 8 8 9 12 11 13 12 8 11 14 12 11 12 11 12 14 8 8 8 8 8 8 14 12 11 12 12 11 9 9 11 8 8 8 8 8 8 8 8 11 10 8 13 13 9 12 12 12 10 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 12 11 11 10 9 8 8 8 8 8 8 8 11 8 9 9 8 14 9 9 8 9 9 8 8 8 11 8 8 8 8 9 10 11 11 11 8 8 8 8 8 8 8 8 10 8 8 8 8 10 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 8 9 11 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 9 8 8 8 9 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 12 11 11 10 8 8 8 8 8 10 8 8 8 12 13 8 8 13 8 13 12 12 10 8 11 8 8 10 12 12 12 10 9 8 8 12 11 8 9 8 8 8 9 11 8 8 8 11 9 11 11 10 8 8 9 9 8 8 8 9 8 8 8 8 11 8 8 13 8 8 12 8 8 8 8 8 8 8 8 8 8 12 8 8 13 8 8 11 8 8 8 8 9 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 11 8 8 8 8 8 10 8 10 8 10 9 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 8 8 8 11 9 8 11 9 9 12 11 10 10 10 11 8 8 8 13 10 10 8 9 11 11 12 13 9 9 9 8 10 13 10 10 9 9 9 9 9 9 9 9 9 9 9 9 11 10 11 14 15 12 11 12 13 14 13 11 11 9 11 11 11 12 11 8 8 8 9 10 12 12 11 9 11 8 8 10 8 8 9 10 9 10 8 11 9 9 9 8 9 8 8 9 8 8 9 8 8 8 8 8 8 9 9 8 8 10 9 10 10 8 9 9 10 9 9 9 9 9 9 9 8 9 9 9 9 11 8 10 9 9 9 9 9 9 9 9 10 9 10 9 11 11 11 11 10 11 9 11 10 10 10 11 11 11 11 11 10 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9
ML_NNI2	((S000444202:0.00011,S001016013:0.00014):0.00858,(S000608874:0.00153,S001418075:0.00014):0.00758,((S002355764:0.02139,((123f3-34:0.00014,S000389918:0.00214):0.02983,((((S000431102:0.00699,S001330257:0.00014):0.03696,((S000608871:0.01764,S001792815:0.00580):0.02728,((S000414529:0.03608,S001792807:0.00182):0.00934,(4Vag-18:0.00173,(S000389919:0.00836,S000473522:0.02636):0.00257):0.01477):0.01576):0.02022):0.03144,((((S001153625:0.00088,S002227570:0.00014):0.01882,(S000483388:0.00064,S002152884:0.00014):0.01497):0.01807,(((S000870727:0.00127,S001792816:0.00211):0.03387,(S000927167:0.00014,S001168699:0.00292):0.03646):0.04986,((S001198995:0.00908,S002227370:0.00014):0.04691,(S000495656:0.00071,S000824731:0.00810):0.02966):0.00765):0.01315):0.01409,(((S000395052:0.00451,(S000014487:0.00014,(S001093459:0.00138,S001264844:0.00014):0.00014):0.00367):0.00535,(S002166047:0.01083,S002227682:0.01035):0.00334):0.02119,(S000004313:0.00349,S000727873:0.00014):0.32013):0.03231):0.02236):0.05783,((136b-31:0.00014,S001910616:0.00016):0.04229,(((S000008742:0.00076,S002165654:0.00570):0.00316,S001264834:0.00410):0.00015,S000995983:0.00202):0.00848):0.01383):0.01849):0.04213):0.01722,((S000390171:0.00014,S001793756:0.00014):0.00477,(S000473523:0.00069,S002355760:0.00065):0.01353):0.00185):0.00238);
TreeLogLk	ML_NNI2	-10089.0212	MaxChange	0.6487
ML_NNI3	((S000444202:0.00011,S001016013:0.00014):0.00859,(S000608874:0.00153,S001418075:0.00014):0.00758,((S002355764:0.02139,((123f3-34:0.00014,S000389918:0.00214):0.02987,((((S000431102:0.00699,S001330257:0.00014):0.03696,((S000608871:0.01764,S001792815:0.00580):0.02728,((S000414529:0.03608,S001792807:0.00182):0.00934,(4Vag-18:0.00173,(S000389919:0.00836,S000473522:0.02636):0.00257):0.01477):0.01576):0.02022):0.03162,((((S001153625:0.00086,S002227570:0.00014):0.01908,(S000483388:0.00065,S002152884:0.00014):0.01470):0.01756,((S000495656:0.00048,S000824731:0.00832):0.03128,((S001198995:0.00910,S002227370:0.00014):0.04181,((S000870727:0.00126,S001792816:0.00211):0.03315,(S000927167:0.00014,S001168699:0.00289):0.03694):0.04781):0.00866):0.01621):0.01430,(((S000395052:0.00451,(S000014487:0.00014,(S001093459:0.00138,S001264844:0.00014):0.00014):0.00367):0.00516,(S002166047:0.01083,S002227682:0.01035):0.00350):0.02062,(S000004313:0.00349,S000727873:0.00014):0.32013):0.03251):0.02269):0.05777,((136b-31:0.00014,S001910616:0.00016):0.04234,(((S000008742:0.00076,S002165654:0.00570):0.00317,S001264834:0.00410):0.00015,S000995983:0.00202):0.00843):0.01395):0.01844):0.04212):0.01722,((S000390171:0.00014,S001793756:0.00014):0.00477,(S000473523:0.00069,S002355760:0.00065):0.01353):0.00185):0.00239);
TreeLogLk	ML_NNI3	-10088.1810	MaxChange	0.7556
ML_NNI4	((S000444202:0.00011,S001016013:0.00014):0.00859,(S000608874:0.00153,S001418075:0.00014):0.00758,((S002355764:0.02134,((123f3-34:0.00014,S000389918:0.00214):0.02987,((((S000431102:0.00699,S001330257:0.00014):0.03696,((S000608871:0.01764,S001792815:0.00580):0.02728,((S000414529:0.03608,S001792807:0.00182):0.00934,(4Vag-18:0.00173,(S000389919:0.00836,S000473522:0.02636):0.00257):0.01477):0.01576):0.02022):0.03162,((((S001153625:0.00086,S002227570:0.00014):0.01910,(S000483388:0.00065,S002152884:0.00014):0.01470):0.01756,((S000495656:0.00014,S000824731:0.00867):0.03136,((S001198995:0.00910,S002227370:0.00014):0.04182,((S000870727:0.00127,S001792816:0.00212):0.03240,(S000927167:0.00014,S001168699:0.00289):0.03733):0.04768):0.00871):0.01625):0.01430,(((S000395052:0.00451,(S000014487:0.00014,(S001093459:0.00138,S001264844:0.00014):0.00014):0.00367):0.00516,(S002166047:0.01083,S002227682:0.01035):0.00350):0.02062,(S000004313:0.00349,S000727873:0.00014):0.32013):0.03256):0.02264):0.05777,((136b-31:0.00014,S001910616:0.00016):0.04234,(((S000008742:0.00076,S002165654:0.00570):0.00317,S001264834:0.00410):0.00015,S000995983:0.00202):0.00843):0.01394):0.01846):0.04212):0.01722,((S000390171:0.00014,S001793756:0.00014):0.00477,(S000473523:0.00069,S002355760:0.00065):0.01353):0.00185):0.00239);
TreeLogLk	ML_NNI4	-10088.1017	MaxChange	0.0000
Turning off heuristics for final round of ML NNIs (converged)
ML_NNI5	((S000444202:0.00011,S001016013:0.00014):0.00859,(S000608874:0.00153,S001418075:0.00014):0.00758,((S002355764:0.02134,((123f3-34:0.00014,S000389918:0.00214):0.02987,((((S000431102:0.00697,S001330257:0.00014):0.03658,((S000608871:0.01767,S001792815:0.00581):0.02700,((S000414529:0.03624,S001792807:0.00177):0.00959,(4Vag-18:0.00183,(S000389919:0.00836,S000473522:0.02636):0.00236):0.01471):0.01582):0.02074):0.03164,((((S001153625:0.00086,S002227570:0.00014):0.01910,(S000483388:0.00065,S002152884:0.00014):0.01468):0.01754,((S000495656:0.00011,S000824731:0.00869):0.03141,((S001198995:0.00910,S002227370:0.00014):0.04187,((S000870727:0.00126,S001792816:0.00210):0.03240,(S000927167:0.00014,S001168699:0.00289):0.03733):0.04768):0.00870):0.01629):0.01428,(((S000395052:0.00454,(S000014487:0.00014,(S001093459:0.00138,S001264844:0.00014):0.00014):0.00362):0.00517,(S002166047:0.01077,S002227682:0.01037):0.00352):0.02059,(S000004313:0.00348,S000727873:0.00014):0.32013):0.03260):0.02271):0.05771,((136b-31:0.00014,S001910616:0.00016):0.04234,(((S000008742:0.00076,S002165654:0.00570):0.00317,S001264834:0.00410):0.00015,S000995983:0.00202):0.00842):0.01395):0.01846):0.04212):0.01722,((S000390171:0.00014,S001793756:0.00014):0.00477,(S000473523:0.00069,S002355760:0.00065):0.01353):0.00185):0.00238);
TreeLogLk	ML_NNI5	-10088.0861	MaxChange	0.0000
ML_Lengths2	((S000444202:0.00011,S001016013:0.00014):0.00859,(S000608874:0.00153,S001418075:0.00014):0.00758,((S002355764:0.02137,((123f3-34:0.00014,S000389918:0.00214):0.02987,((((S000431102:0.00698,S001330257:0.00014):0.03658,((S000608871:0.01765,S001792815:0.00581):0.02700,((S000414529:0.03629,S001792807:0.00177):0.00960,(4Vag-18:0.00184,(S000389919:0.00836,S000473522:0.02636):0.00232):0.01475):0.01584):0.02072):0.03167,((((S001153625:0.00086,S002227570:0.00014):0.01910,(S000483388:0.00065,S002152884:0.00014):0.01468):0.01754,((S000495656:0.00011,S000824731:0.00870):0.03141,((S001198995:0.00910,S002227370:0.00014):0.04187,((S000870727:0.00126,S001792816:0.00210):0.03240,(S000927167:0.00014,S001168699:0.00289):0.03733):0.04768):0.00870):0.01625):0.01426,(((S000395052:0.00454,(S000014487:0.00014,(S001093459:0.00138,S001264844:0.00014):0.00014):0.00362):0.00517,(S002166047:0.01077,S002227682:0.01037):0.00352):0.02059,(S000004313:0.00348,S000727873:0.00014):0.32045):0.03260):0.02267):0.05771,((136b-31:0.00014,S001910616:0.00016):0.04234,(((S000008742:0.00076,S002165654:0.00570):0.00317,S001264834:0.00410):0.00015,S000995983:0.00202):0.00842):0.01395):0.01846):0.04212):0.01722,((S000390171:0.00014,S001793756:0.00014):0.00477,(S000473523:0.00069,S002355760:0.00065):0.01351):0.00185):0.00239);
TreeLogLk	ML_Lengths2	-10088.0859
Total time: 10.80 seconds Unique: 46/46 Bad splits: 0/43
Dist/N**2: by-profile 6.191 (out 0.439) by-leaf 0.563 avg-prof 4.081
Top hits: close neighbors 32/46 2nd-level 0 refreshes 14 Hill-climb: 0 Update-best: 1
NNI: 3 SPR: 0 ML-NNI: 7
Max-lk operations: lk 52111 posterior 13000 star-only 0
TreeCompleted
