LICENSE.txt
README.md
setup.cfg
setup.py
src/NaroNet/NaroNet.py
src/NaroNet/NaroNet_dataset.py
src/NaroNet/NaroNet_dataset_simple.py
src/NaroNet/NaroNet_simple.py
src/NaroNet/TrainValidateTest.py
src/NaroNet/__init__.py
src/NaroNet/run.py
src/NaroNet.egg-info/PKG-INFO
src/NaroNet.egg-info/SOURCES.txt
src/NaroNet.egg-info/dependency_links.txt
src/NaroNet.egg-info/requires.txt
src/NaroNet.egg-info/top_level.txt
src/NaroNet/BioInsights/Cell_type_abundance.py
src/NaroNet/BioInsights/Differential_abundance_analysis.py
src/NaroNet/BioInsights/Pheno_Neigh_Info.py
src/NaroNet/BioInsights/Synthetic_GT_TME.py
src/NaroNet/BioInsights/TME_location_in_image.py
src/NaroNet/BioInsights/__init__.py
src/NaroNet/BioInsights/add_annotation_stat.py
src/NaroNet/BioInsights/adjust_pvalues.py
src/NaroNet/NaroNet_model/CNN3D_model.py
src/NaroNet/NaroNet_model/GLORE.py
src/NaroNet/NaroNet_model/GNN.py
src/NaroNet/NaroNet_model/NRI.py
src/NaroNet/NaroNet_model/NaroNet_model.py
src/NaroNet/NaroNet_model/NaroNet_model_simple.py
src/NaroNet/NaroNet_model/Oldmodels.py
src/NaroNet/NaroNet_model/__init__.py
src/NaroNet/NaroNet_model/loss.py
src/NaroNet/NaroNet_model/lossGrad.py
src/NaroNet/NaroNet_model/modelV2.py
src/NaroNet/NaroNet_model/pooling.py
src/NaroNet/NaroNet_model/pysurv.py
src/NaroNet/NaroNet_model/torch_geometric_rusty.py
src/NaroNet/Patch_Contrastive_Learning/Patch_Contrastive_Learning.py
src/NaroNet/Patch_Contrastive_Learning/__init__.py
src/NaroNet/Patch_Contrastive_Learning/preprocess_images.py
src/NaroNet/Patch_Contrastive_Learning/run PCL_WSI.py
src/NaroNet/Patch_Contrastive_Learning/run.py
src/NaroNet/Patch_Contrastive_Learning/run_PCL.py
src/NaroNet/Patch_Contrastive_Learning/run_PCL_WSI_STK.py
src/NaroNet/Patch_Contrastive_Learning/run_PCL_WSI_STK_NORM.py
src/NaroNet/Patch_Contrastive_Learning/simclr PCL.py
src/NaroNet/Patch_Contrastive_Learning/simclr.py
src/NaroNet/Patch_Contrastive_Learning/utils.py
src/NaroNet/Patch_Contrastive_Learning/data_aug/__init__.py
src/NaroNet/Patch_Contrastive_Learning/data_aug/contrastive_learning_dataset.py
src/NaroNet/Patch_Contrastive_Learning/data_aug/gaussian_blur.py
src/NaroNet/Patch_Contrastive_Learning/data_aug/view_generator.py
src/NaroNet/Patch_Contrastive_Learning/exceptions/__init__.py
src/NaroNet/Patch_Contrastive_Learning/exceptions/exceptions.py
src/NaroNet/Patch_Contrastive_Learning/feature_eval/__init__.py
src/NaroNet/Patch_Contrastive_Learning/models/__init__.py
src/NaroNet/Patch_Contrastive_Learning/models/resnet_simclr.py
src/NaroNet/architecture_search/__init__.py
src/NaroNet/architecture_search/architecture_search.py
src/NaroNet/architecture_search/extract_info_architectureSearch.py
src/NaroNet/ray/__init__.py
src/NaroNet/utils/DatasetParameters.py
src/NaroNet/utils/Survival_Cell.py
src/NaroNet/utils/Survival_ComparePredictionAndLabel.py
src/NaroNet/utils/__init__.py
src/NaroNet/utils/calculate_confidence_intervals_AUC.py
src/NaroNet/utils/graph_data.py
src/NaroNet/utils/merge_xlsx_files.py
src/NaroNet/utils/modules.py
src/NaroNet/utils/parallel_process.py
src/NaroNet/utils/plot_confusion_matrix.py
src/NaroNet/utils/pycox_example.py
src/NaroNet/utils/rename.py
src/NaroNet/utils/rename_fi.py
src/NaroNet/utils/utilz.py