AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/api.rst
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index_stage1.rst
docs/index_stage2.rst
docs/indices.rst
docs/_templates/autosummary/class.rst
docs/_templates/autosummary/exception.rst
docs/_templates/autosummary/function.rst
docs/_templates/autosummary/module.rst
docs/assets/a=policy_panel_plot+num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+ext=.gif
docs/assets/a=policy_panel_plot+num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=False+extinct_history=False+extinct_placeholders=True+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-4+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=False+extinct_placeholders=True+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-4+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-4+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+ext=.gif
docs/assets/a=stratum_retention_dripplot+extant_history=True+extinct_history=True+extinct_placeholders=False+num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+ext=.gif
docs/assets/bitstring_inference.png
docs/assets/hcat-banner.png
docs/assets/hcat.png
docs/assets/hstrat-hcat.png
docs/assets/hstrat-wordmark.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-2+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=depth-proportional-resolution-stratum-retention-algorithm-resolution-8+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-128+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=fixed-resolution-stratum-retention-algorithm-resolution-32+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-1024-interspersal-2+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=nth-root-geometric-sequence-stratum-retention-algorithm-degree-6-interspersal-2+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-0+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=recency-proportional-resolution-stratum-retention-algorithm-resolution-6+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-1+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-depth-proportional-resolution-stratum-retention-algorithm-resolution-7+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-1-interspersal-2+viz=stratum-retention-dripplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+viz=mrca-uncertainty-absolute-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+viz=mrca-uncertainty-relative-barplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+viz=strata-retained-frac-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+viz=strata-retained-num-lineplot+ext=.png
docs/assets/num_generations=256+policy=tapered-nth-root-geometric-sequence-stratum-retention-algorithm-degree-4-interspersal-2+viz=stratum-retention-dripplot+ext=.png
docs/assets/pruning.png
docs/assets/pruning_distribution.png
docs/assets/pruning_intensity.png
docs/assets/stratigraph_inference.png
hstrat/__init__.py
hstrat.egg-info/PKG-INFO
hstrat.egg-info/SOURCES.txt
hstrat.egg-info/dependency_links.txt
hstrat.egg-info/requires.txt
hstrat.egg-info/top_level.txt
hstrat/_auxiliary_lib/_AnyTreeAscendingIter.py
hstrat/_auxiliary_lib/_AnyTreeFastLeafIter.py
hstrat/_auxiliary_lib/_AnyTreeFastLevelOrderIter.py
hstrat/_auxiliary_lib/_AnyTreeFastPostOrderIter.py
hstrat/_auxiliary_lib/_AnyTreeFastPreOrderIter.py
hstrat/_auxiliary_lib/_BioPhyloTree.py
hstrat/_auxiliary_lib/_CopyableSeriesItemsIter.py
hstrat/_auxiliary_lib/_HereditaryStratigraphicArtifact.py
hstrat/_auxiliary_lib/_RecursionLimit.py
hstrat/_auxiliary_lib/_RngStateContext.py
hstrat/_auxiliary_lib/_ScalarFormatterFixedPrecision.py
hstrat/_auxiliary_lib/__init__.py
hstrat/_auxiliary_lib/_alifestd_aggregate_phylogenies.py
hstrat/_auxiliary_lib/_alifestd_assign_contiguous_ids.py
hstrat/_auxiliary_lib/_alifestd_assign_root_ancestor_token.py
hstrat/_auxiliary_lib/_alifestd_collapse_unifurcations.py
hstrat/_auxiliary_lib/_alifestd_convert_root_ancestor_token.py
hstrat/_auxiliary_lib/_alifestd_find_chronological_inconsistency.py
hstrat/_auxiliary_lib/_alifestd_find_leaf_ids.py
hstrat/_auxiliary_lib/_alifestd_find_root_ids.py
hstrat/_auxiliary_lib/_alifestd_has_compact_ids.py
hstrat/_auxiliary_lib/_alifestd_has_contiguous_ids.py
hstrat/_auxiliary_lib/_alifestd_has_multiple_roots.py
hstrat/_auxiliary_lib/_alifestd_is_asexual.py
hstrat/_auxiliary_lib/_alifestd_is_chronologically_ordered.py
hstrat/_auxiliary_lib/_alifestd_is_sexual.py
hstrat/_auxiliary_lib/_alifestd_is_topologically_sorted.py
hstrat/_auxiliary_lib/_alifestd_make_ancestor_id_col.py
hstrat/_auxiliary_lib/_alifestd_make_ancestor_list_col.py
hstrat/_auxiliary_lib/_alifestd_make_empty.py
hstrat/_auxiliary_lib/_alifestd_parse_ancestor_id.py
hstrat/_auxiliary_lib/_alifestd_parse_ancestor_ids.py
hstrat/_auxiliary_lib/_alifestd_reroot_at_id_asexual.py
hstrat/_auxiliary_lib/_alifestd_splay_polytomies.py
hstrat/_auxiliary_lib/_alifestd_to_working_format.py
hstrat/_auxiliary_lib/_alifestd_topological_sort.py
hstrat/_auxiliary_lib/_alifestd_try_add_ancestor_id_col.py
hstrat/_auxiliary_lib/_alifestd_unfurl_lineage_asexual.py
hstrat/_auxiliary_lib/_alifestd_validate.py
hstrat/_auxiliary_lib/_all_same.py
hstrat/_auxiliary_lib/_all_unique.py
hstrat/_auxiliary_lib/_anynode_deepcopy_except_neighbors.py
hstrat/_auxiliary_lib/_anytree_calc_leaf_counts.py
hstrat/_auxiliary_lib/_anytree_cardinality.py
hstrat/_auxiliary_lib/_anytree_has_grandparent.py
hstrat/_auxiliary_lib/_anytree_has_sibling.py
hstrat/_auxiliary_lib/_anytree_iterative_deepcopy.py
hstrat/_auxiliary_lib/_anytree_peel_sibling_to_cousin.py
hstrat/_auxiliary_lib/_anytree_tree_to_alife_dataframe.py
hstrat/_auxiliary_lib/_apply_swaps.py
hstrat/_auxiliary_lib/_argsort.py
hstrat/_auxiliary_lib/_as_compact_type.py
hstrat/_auxiliary_lib/_as_nullable_type.py
hstrat/_auxiliary_lib/_assign_intersecting_subsets.py
hstrat/_auxiliary_lib/_bit_ceil.py
hstrat/_auxiliary_lib/_bit_floor.py
hstrat/_auxiliary_lib/_capitalize_n.py
hstrat/_auxiliary_lib/_caretdown_marker.py
hstrat/_auxiliary_lib/_caretup_marker.py
hstrat/_auxiliary_lib/_check_testing_requirements.py
hstrat/_auxiliary_lib/_cmp.py
hstrat/_auxiliary_lib/_cmp_approx.py
hstrat/_auxiliary_lib/_consume.py
hstrat/_auxiliary_lib/_coshuffled.py
hstrat/_auxiliary_lib/_count_unique.py
hstrat/_auxiliary_lib/_curried_binary_search_jit.py
hstrat/_auxiliary_lib/_deep_listify.py
hstrat/_auxiliary_lib/_demark.py
hstrat/_auxiliary_lib/_div_range.py
hstrat/_auxiliary_lib/_find_bounds.py
hstrat/_auxiliary_lib/_flag_last.py
hstrat/_auxiliary_lib/_flat_len.py
hstrat/_auxiliary_lib/_generate_n.py
hstrat/_auxiliary_lib/_generate_omission_subsets.py
hstrat/_auxiliary_lib/_get_hstrat_version.py
hstrat/_auxiliary_lib/_get_nullable_mask.py
hstrat/_auxiliary_lib/_get_nullable_vals.py
hstrat/_auxiliary_lib/_give_len.py
hstrat/_auxiliary_lib/_indices_of_unique.py
hstrat/_auxiliary_lib/_intersect_ranges.py
hstrat/_auxiliary_lib/_is_base64.py
hstrat/_auxiliary_lib/_is_in.py
hstrat/_auxiliary_lib/_is_in_coverage_run.py
hstrat/_auxiliary_lib/_is_in_unit_test.py
hstrat/_auxiliary_lib/_is_nondecreasing.py
hstrat/_auxiliary_lib/_is_nonincreasing.py
hstrat/_auxiliary_lib/_is_strictly_decreasing.py
hstrat/_auxiliary_lib/_is_strictly_increasing.py
hstrat/_auxiliary_lib/_is_subset.py
hstrat/_auxiliary_lib/_iter_chunks.py
hstrat/_auxiliary_lib/_iter_monotonic_equivalencies.py
hstrat/_auxiliary_lib/_iter_monotonic_equivalencies_reverse.py
hstrat/_auxiliary_lib/_iter_slices.py
hstrat/_auxiliary_lib/_jit.py
hstrat/_auxiliary_lib/_jit_numba_dict_t.py
hstrat/_auxiliary_lib/_jit_numba_integer_array_ts.py
hstrat/_auxiliary_lib/_jit_numpy_bool_t.py
hstrat/_auxiliary_lib/_jit_numpy_int64_t.py
hstrat/_auxiliary_lib/_launder_impl_modules.py
hstrat/_auxiliary_lib/_log_once_in_a_row.py
hstrat/_auxiliary_lib/_make_intersecting_subsets.py
hstrat/_auxiliary_lib/_memoize_generator.py
hstrat/_auxiliary_lib/_min_array_dtype.py
hstrat/_auxiliary_lib/_numpy_fromiter_polyfill.py
hstrat/_auxiliary_lib/_numpy_index.py
hstrat/_auxiliary_lib/_numpy_index_flat.py
hstrat/_auxiliary_lib/_omit_last.py
hstrat/_auxiliary_lib/_pairwise.py
hstrat/_auxiliary_lib/_parse_from_numeral_system.py
hstrat/_auxiliary_lib/_popcount.py
hstrat/_auxiliary_lib/_raises.py
hstrat/_auxiliary_lib/_random_choice_generator.py
hstrat/_auxiliary_lib/_release_cur_mpl_fig.py
hstrat/_auxiliary_lib/_render_to_base64url.py
hstrat/_auxiliary_lib/_render_to_numeral_system.py
hstrat/_auxiliary_lib/_reversed_enumerate.py
hstrat/_auxiliary_lib/_reversed_range.py
hstrat/_auxiliary_lib/_scale_luminosity.py
hstrat/_auxiliary_lib/_seed_random.py
hstrat/_auxiliary_lib/_splicewhile.py
hstrat/_auxiliary_lib/_swap_rows_and_indices.py
hstrat/_auxiliary_lib/_to_tril.py
hstrat/_auxiliary_lib/_unfurl_lineage_with_contiguous_ids.py
hstrat/_auxiliary_lib/_unpairwise.py
hstrat/_auxiliary_lib/_unzip.py
hstrat/_auxiliary_lib/_with_omission.py
hstrat/_auxiliary_lib/_with_rng_state_context.py
hstrat/_auxiliary_lib/_zip_strict.py
hstrat/frozen_instrumentation/_HereditaryStratigraphicAssemblage.py
hstrat/frozen_instrumentation/_HereditaryStratigraphicAssemblageSpecimen.py
hstrat/frozen_instrumentation/_HereditaryStratigraphicSpecimen.py
hstrat/frozen_instrumentation/__init__.py
hstrat/genome_instrumentation/_HereditaryStratigraphicColumn.py
hstrat/genome_instrumentation/_HereditaryStratigraphicColumnBundle.py
hstrat/genome_instrumentation/_HereditaryStratum.py
hstrat/genome_instrumentation/__init__.py
hstrat/genome_instrumentation/stratum_ordered_stores/_HereditaryStratumOrderedStoreDict.py
hstrat/genome_instrumentation/stratum_ordered_stores/_HereditaryStratumOrderedStoreList.py
hstrat/genome_instrumentation/stratum_ordered_stores/_HereditaryStratumOrderedStoreTree.py
hstrat/genome_instrumentation/stratum_ordered_stores/__init__.py
hstrat/genome_instrumentation/stratum_ordered_stores/_detail/_HereditaryStratumOrderedStoreBase.py
hstrat/genome_instrumentation/stratum_ordered_stores/_detail/__init__.py
hstrat/hstrat/__init__.py
hstrat/juxtaposition/__init__.py
hstrat/juxtaposition/_calc_definitive_max_rank_of_first_retained_disparity_between.py
hstrat/juxtaposition/_calc_definitive_max_rank_of_last_retained_commonality_between.py
hstrat/juxtaposition/_calc_definitive_min_ranks_since_first_retained_disparity_with.py
hstrat/juxtaposition/_calc_definitive_min_ranks_since_last_retained_commonality_with.py
hstrat/juxtaposition/_calc_min_implausible_spurious_consecutive_differentia_collisions_between.py
hstrat/juxtaposition/_calc_probability_differentia_collision_between.py
hstrat/juxtaposition/_calc_rank_of_first_retained_disparity_between.py
hstrat/juxtaposition/_calc_rank_of_last_retained_commonality_between.py
hstrat/juxtaposition/_calc_ranks_since_first_retained_disparity_with.py
hstrat/juxtaposition/_calc_ranks_since_last_retained_commonality_with.py
hstrat/juxtaposition/_diff_retained_ranks.py
hstrat/juxtaposition/_get_last_common_stratum_between.py
hstrat/juxtaposition/_get_nth_common_rank_between.py
hstrat/juxtaposition/_impl/__init__.py
hstrat/juxtaposition/_impl/_dispatch_impl.py
hstrat/juxtaposition/_impl_column/__init__.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_first_retained_disparity_between.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_first_retained_disparity_between_bsearch.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_first_retained_disparity_between_generic.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_last_retained_commonality_between.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_last_retained_commonality_between_bsearch.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_last_retained_commonality_between_generic.py
hstrat/juxtaposition/_impl_column/_calc_rank_of_parity_segue_between.py
hstrat/juxtaposition/_impl_column/_iter_mutual_ranks.py
hstrat/juxtaposition/_impl_column/_iter_ranks_of_retained_commonality_between.py
hstrat/juxtaposition/_impl_specimen/__init__.py
hstrat/juxtaposition/_impl_specimen/_calc_rank_of_first_retained_disparity_between.py
hstrat/juxtaposition/_impl_specimen/_calc_rank_of_last_retained_commonality_between.py
hstrat/juxtaposition/_impl_specimen/_calc_rank_of_parity_segue_between.py
hstrat/juxtaposition/_impl_specimen/_calc_rank_of_parity_segue_between_naive.py
hstrat/juxtaposition/_impl_specimen/_iter_mutual_rank_indices.py
hstrat/juxtaposition/_impl_specimen/_iter_mutual_ranks.py
hstrat/juxtaposition/_impl_specimen/_iter_ranks_of_retained_commonality_between.py
hstrat/phylogenetic_inference/__init__.py
hstrat/phylogenetic_inference/estimators/__init__.py
hstrat/phylogenetic_inference/estimators/_estimate_rank_of_mrca_maximum_likelihood.py
hstrat/phylogenetic_inference/estimators/_estimate_rank_of_mrca_naive.py
hstrat/phylogenetic_inference/estimators/_estimate_rank_of_mrca_unbiased.py
hstrat/phylogenetic_inference/pairwise/__init__.py
hstrat/phylogenetic_inference/pairwise/_ballpark_patristic_distance_between.py
hstrat/phylogenetic_inference/pairwise/_ballpark_rank_of_mrca_between.py
hstrat/phylogenetic_inference/pairwise/_ballpark_ranks_since_mrca_with.py
hstrat/phylogenetic_inference/pairwise/_calc_patristic_distance_bounds_between.py
hstrat/phylogenetic_inference/pairwise/_calc_rank_of_earliest_detectable_mrca_between.py
hstrat/phylogenetic_inference/pairwise/_calc_rank_of_mrca_bounds_between.py
hstrat/phylogenetic_inference/pairwise/_calc_rank_of_mrca_bounds_provided_confidence_level.py
hstrat/phylogenetic_inference/pairwise/_calc_rank_of_mrca_uncertainty_between.py
hstrat/phylogenetic_inference/pairwise/_calc_ranks_since_earliest_detectable_mrca_with.py
hstrat/phylogenetic_inference/pairwise/_calc_ranks_since_mrca_bounds_provided_confidence_level.py
hstrat/phylogenetic_inference/pairwise/_calc_ranks_since_mrca_bounds_with.py
hstrat/phylogenetic_inference/pairwise/_calc_ranks_since_mrca_uncertainty_with.py
hstrat/phylogenetic_inference/pairwise/_does_definitively_have_no_common_ancestor.py
hstrat/phylogenetic_inference/pairwise/_does_have_any_common_ancestor.py
hstrat/phylogenetic_inference/pairwise/_estimate_patristic_distance_between.py
hstrat/phylogenetic_inference/pairwise/_estimate_rank_of_mrca_between.py
hstrat/phylogenetic_inference/pairwise/_estimate_ranks_since_mrca_with.py
hstrat/phylogenetic_inference/pairwise/_impl/__init__.py
hstrat/phylogenetic_inference/pairwise/_impl/_estimate_rank_of_mrca_maximum_likelihood.py
hstrat/phylogenetic_inference/pairwise/_impl/_estimate_rank_of_mrca_naive.py
hstrat/phylogenetic_inference/pairwise/_impl/_estimate_rank_of_mrca_unbiased.py
hstrat/phylogenetic_inference/pairwise/_impl/_extract_common_retained_ranks_through_first_retained_disparity.py
hstrat/phylogenetic_inference/population/__init__.py
hstrat/phylogenetic_inference/population/_build_distance_matrix_biopython.py
hstrat/phylogenetic_inference/population/_build_distance_matrix_numpy.py
hstrat/phylogenetic_inference/population/_calc_rank_of_earliest_detectable_mrca_among.py
hstrat/phylogenetic_inference/population/_calc_rank_of_mrca_bounds_among.py
hstrat/phylogenetic_inference/population/_calc_rank_of_mrca_uncertainty_among.py
hstrat/phylogenetic_inference/population/_does_definitively_share_no_common_ancestor.py
hstrat/phylogenetic_inference/population/_does_share_any_common_ancestor.py
hstrat/phylogenetic_inference/priors/_ArbitraryPrior.py
hstrat/phylogenetic_inference/priors/_BubbleWrappedPrior.py
hstrat/phylogenetic_inference/priors/_ExponentialPrior.py
hstrat/phylogenetic_inference/priors/_GeometricPrior.py
hstrat/phylogenetic_inference/priors/_UniformPrior.py
hstrat/phylogenetic_inference/priors/__init__.py
hstrat/phylogenetic_inference/tree/__init__.py
hstrat/phylogenetic_inference/tree/_build_tree.py
hstrat/phylogenetic_inference/tree/_build_tree_nj.py
hstrat/phylogenetic_inference/tree/_build_tree_trie.py
hstrat/phylogenetic_inference/tree/_build_tree_trie_ensemble.py
hstrat/phylogenetic_inference/tree/_build_tree_upgma.py
hstrat/phylogenetic_inference/tree/_impl/_TrieInnerNode.py
hstrat/phylogenetic_inference/tree/_impl/_TrieLeafNode.py
hstrat/phylogenetic_inference/tree/_impl/__init__.py
hstrat/phylogenetic_inference/tree/_impl/_append_genesis_organism.py
hstrat/phylogenetic_inference/tree/_impl/_build_tree_biopython_distance.py
hstrat/phylogenetic_inference/tree/_impl/_build_trie_from_artifacts.py
hstrat/phylogenetic_inference/tree/_impl/_estimate_origin_times.py
hstrat/phylogenetic_inference/tree/_impl/_find_chronological_root.py
hstrat/phylogenetic_inference/tree/_impl/_find_chronological_roots.py
hstrat/phylogenetic_inference/tree/_impl/_time_calibrate_tree.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignDestructionTimeYoungestPlusOneTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeExpectedValueTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeNaiveTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_AssignOriginTimeNodeRankTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_CompoundTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_PeelBackConjoinedLeavesTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/_SampleAncestralRollbacksTriePostprocessor.py
hstrat/phylogenetic_inference/tree/trie_postprocess/__init__.py
hstrat/serialization/__init__.py
hstrat/serialization/_assemblage_from_records.py
hstrat/serialization/_col_from_records.py
hstrat/serialization/_col_to_dataframe.py
hstrat/serialization/_col_to_records.py
hstrat/serialization/_col_to_specimen.py
hstrat/serialization/_pack_differentiae.py
hstrat/serialization/_pop_from_records.py
hstrat/serialization/_pop_to_assemblage.py
hstrat/serialization/_pop_to_dataframe.py
hstrat/serialization/_pop_to_records.py
hstrat/serialization/_specimen_from_records.py
hstrat/serialization/_unassemblage_from_records.py
hstrat/serialization/_unpack_differentiae.py
hstrat/serialization/_impl/__init__.py
hstrat/serialization/_impl/_col_records_from_pop_records.py
hstrat/serialization/_impl/_policy_from_record.py
hstrat/stratum_retention_strategy/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_PolicyCouplerBase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_PolicyCouplerFactory.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_PolicySpecBase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/_UnsatisfiableParameterizationRequestError.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_detail/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyAbsUpperBoundPessimalRankBruteForce.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyAbsUpperBoundWorstCase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelExactFromAbs.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelUpperBoundPessimalRankBruteForce.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcMrcaUncertaintyRelUpperBoundWorstCase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_CalcNumStrataRetainedUpperBoundWorstCase.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/_GenDropRanksFromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_impl/_calc_provided_uncertainty.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_impl/_calc_provided_uncertainty.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/depth_proportional_resolution_tapered_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/fixed_resolution_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_calc_common_ratio.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_get_retained_ranks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_iter_rank_backstops.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_iter_rank_cutoffs.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_iter_rank_seps.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_iter_target_ranks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_impl/_iter_target_recencies.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_calc_common_ratio.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_calc_rank_backstop.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_calc_rank_cutoff.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_calc_rank_sep.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_calc_target_rank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_calc_target_recency.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_get_retained_ranks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_impl/_iter_priority_ranks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/geom_seq_nth_root_tapered_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/nominal_resolution_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/perfect_resolution_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_impl/_decide_if_discard.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/pseudostochastic_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_impl/_calc_provided_uncertainty.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_impl/_num_to_condemn.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/recency_proportional_resolution_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_Policy.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_PolicySpec.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_enact/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_enact/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_enact/_GenDropRanks_/_FromPredKeepRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_enact/_GenDropRanks_/_GenDropRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_enact/_GenDropRanks_/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_impl/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_impl/_decide_if_discard.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcMrcaUncertaintyAbsUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcMrcaUncertaintyRelUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/_CalcNumStrataRetainedUpperBound.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_invar/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_scry/_CalcMrcaUncertaintyAbsExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_scry/_CalcMrcaUncertaintyRelExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_scry/_CalcNumStrataRetainedExact.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_scry/_CalcRankAtColumnIndex.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_scry/_IterRetainedRanks.py
hstrat/stratum_retention_strategy/stratum_retention_algorithms/stochastic_algo/_scry/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_MrcaUncertaintyAbsExactEvaluator.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_MrcaUncertaintyAbsUpperBoundEvaluator.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_MrcaUncertaintyRelExactEvaluator.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_MrcaUncertaintyRelUpperBoundEvaluator.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_NumStrataRetainedExactEvaluator.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_NumStrataRetainedUpperBoundEvaluator.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_detail/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_policy_evaluators/_detail/_policy_param_focalizer_t.py
hstrat/stratum_retention_strategy/stratum_retention_policy_parameterizers/_PropertyAtLeastParameterizer.py
hstrat/stratum_retention_strategy/stratum_retention_policy_parameterizers/_PropertyAtMostParameterizer.py
hstrat/stratum_retention_strategy/stratum_retention_policy_parameterizers/_PropertyExactlyParameterizer.py
hstrat/stratum_retention_strategy/stratum_retention_policy_parameterizers/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_policy_parameterizers/_detail/__init__.py
hstrat/stratum_retention_strategy/stratum_retention_policy_parameterizers/_detail/_policy_evaluator_t.py
hstrat/stratum_retention_viz/__init__.py
hstrat/stratum_retention_viz/animate/__init__.py
hstrat/stratum_retention_viz/animate/_policy_panel_animate.py
hstrat/stratum_retention_viz/animate/_stratum_retention_animate.py
hstrat/stratum_retention_viz/ascii/__init__.py
hstrat/stratum_retention_viz/ascii/_col_to_ascii.py
hstrat/stratum_retention_viz/plot/__init__.py
hstrat/stratum_retention_viz/plot/_mrca_uncertainty_absolute_barplot.py
hstrat/stratum_retention_viz/plot/_mrca_uncertainty_relative_barplot.py
hstrat/stratum_retention_viz/plot/_policy_panel_plot.py
hstrat/stratum_retention_viz/plot/_strata_retained_frac_lineplot.py
hstrat/stratum_retention_viz/plot/_strata_retained_num_lineplot.py
hstrat/stratum_retention_viz/plot/_stratum_retention_dripplot.py
hstrat/test_drive/__init__.py
hstrat/test_drive/descend_template_phylogeny/__init__.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny_alifestd.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny_biopython.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny_dendropy.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny_naive.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny_networkx.py
hstrat/test_drive/descend_template_phylogeny/_descend_template_phylogeny_posthoc.py
hstrat/test_drive/generate_template_phylogeny/__init__.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/__init__.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/_apply_island_migrations.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/_apply_mutation.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/_apply_niche_invasions.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/_get_island_id.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/_get_niche_id.py
hstrat/test_drive/generate_template_phylogeny/_evolve_fitness_trait_population_/_select_parents.py
hstrat/test_drive/perfect_tracking/_DecantingPhyloTracker.py
hstrat/test_drive/perfect_tracking/_GarbageCollectingPhyloTracker.py
hstrat/test_drive/perfect_tracking/_PerfectBacktrackHandle.py
hstrat/test_drive/perfect_tracking/__init__.py
hstrat/test_drive/perfect_tracking/_compile_perfect_backtrack_phylogeny.py
hstrat/test_drive/perfect_tracking/_compile_phylogeny_from_lineage_iters.py
hstrat/test_drive/perfect_tracking/_iter_perfect_backtrack_lineage.py
hstrat/test_drive/perfect_tracking/_GarbageCollectingPhyloTracker_/__init__.py
hstrat/test_drive/perfect_tracking/_GarbageCollectingPhyloTracker_/_discern_referenced_rows.py
tests/__init__.py
tests/test_hstrat/__init__.py
tests/test_hstrat/conftest.py
tests/test_hstrat/run_tests.sh
tests/test_hstrat/assets/grandchild.newick
tests/test_hstrat/assets/grandchild_and_aunt.newick
tests/test_hstrat/assets/grandchild_and_auntuncle.newick
tests/test_hstrat/assets/grandtriplets.newick
tests/test_hstrat/assets/grandtriplets_and_aunt.newick
tests/test_hstrat/assets/grandtriplets_and_auntuncle.newick
tests/test_hstrat/assets/grandtwins.newick
tests/test_hstrat/assets/grandtwins_and_aunt.newick
tests/test_hstrat/assets/grandtwins_and_auntuncle.newick
tests/test_hstrat/assets/greatgrandtwins_and_auntuncle.newick
tests/test_hstrat/assets/justroot.newick
tests/test_hstrat/assets/nk_ecoeaselection.csv
tests/test_hstrat/assets/nk_lexicaseselection.csv
tests/test_hstrat/assets/nk_tournamentselection.csv
tests/test_hstrat/assets/onlychild.newick
tests/test_hstrat/assets/triplets.newick
tests/test_hstrat/assets/twins.newick
tests/test_hstrat/test_auxiliary_lib/__init__.py
tests/test_hstrat/test_auxiliary_lib/test_AnyTreeAscendingIter.py
tests/test_hstrat/test_auxiliary_lib/test_AnyTreeFastLeafIter.py
tests/test_hstrat/test_auxiliary_lib/test_AnyTreeFastLevelOrderIter.py
tests/test_hstrat/test_auxiliary_lib/test_AnyTreeFastPostOrderIter.py
tests/test_hstrat/test_auxiliary_lib/test_AnyTreeFastPreOrderIter.py
tests/test_hstrat/test_auxiliary_lib/test_CopyableSeriesItemsIter.py
tests/test_hstrat/test_auxiliary_lib/test_HereditaryStratigraphicArtifact.py
tests/test_hstrat/test_auxiliary_lib/test_RngStateContext.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_aggregate_phylogenies.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_assign_contiguous_ids.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_assign_root_ancestor_token.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_collapse_unifurcations.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_convert_root_ancestor_token.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_find_chronological_inconsistency.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_find_leaf_ids.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_find_root_ids.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_has_compact_ids.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_has_contiguous_ids.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_has_multiple_roots.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_is_asexual.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_is_chronologically_ordered.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_is_sexual.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_is_topologically_sorted.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_make_ancestor_id_col.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_make_ancestor_list_col.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_make_empty.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_parse_ancestor_id.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_parse_ancestor_ids.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_reroot_at_id_asexual.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_splay_polytomies.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_to_working_format.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_topological_sort.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_try_add_ancestor_id_col.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_unfurl_lineage_asexual.py
tests/test_hstrat/test_auxiliary_lib/test_alifestd_validate.py
tests/test_hstrat/test_auxiliary_lib/test_all_same.py
tests/test_hstrat/test_auxiliary_lib/test_all_unique.py
tests/test_hstrat/test_auxiliary_lib/test_anynode_deepcopy_except_neighbors.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_calc_leaf_counts.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_cardinality.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_has_grandparent.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_has_sibling.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_iterative_deepcopy.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_peel_sibling_to_cousin.py
tests/test_hstrat/test_auxiliary_lib/test_anytree_tree_to_alife_dataframe.py
tests/test_hstrat/test_auxiliary_lib/test_apply_swaps.py
tests/test_hstrat/test_auxiliary_lib/test_argsort.py
tests/test_hstrat/test_auxiliary_lib/test_as_compact_type.py
tests/test_hstrat/test_auxiliary_lib/test_as_nullable_type.py
tests/test_hstrat/test_auxiliary_lib/test_assign_intersecting_subsets.py
tests/test_hstrat/test_auxiliary_lib/test_bit_ceil.py
tests/test_hstrat/test_auxiliary_lib/test_bit_floor.py
tests/test_hstrat/test_auxiliary_lib/test_capitalize_n.py
tests/test_hstrat/test_auxiliary_lib/test_cmp.py
tests/test_hstrat/test_auxiliary_lib/test_cmp_approx.py
tests/test_hstrat/test_auxiliary_lib/test_consume.py
tests/test_hstrat/test_auxiliary_lib/test_coshuffled.py
tests/test_hstrat/test_auxiliary_lib/test_count_unique.py
tests/test_hstrat/test_auxiliary_lib/test_curried_binary_search_jit.py
tests/test_hstrat/test_auxiliary_lib/test_deep_listify.py
tests/test_hstrat/test_auxiliary_lib/test_demark.py
tests/test_hstrat/test_auxiliary_lib/test_div_range.py
tests/test_hstrat/test_auxiliary_lib/test_find_bounds.py
tests/test_hstrat/test_auxiliary_lib/test_flag_last.py
tests/test_hstrat/test_auxiliary_lib/test_flat_len.py
tests/test_hstrat/test_auxiliary_lib/test_generate_n.py
tests/test_hstrat/test_auxiliary_lib/test_generate_omission_subsets.py
tests/test_hstrat/test_auxiliary_lib/test_get_hstrat_version.py
tests/test_hstrat/test_auxiliary_lib/test_get_nullable_mask.py
tests/test_hstrat/test_auxiliary_lib/test_get_nullable_vals.py
tests/test_hstrat/test_auxiliary_lib/test_give_len.py
tests/test_hstrat/test_auxiliary_lib/test_indices_of_unique.py
tests/test_hstrat/test_auxiliary_lib/test_intersect_ranges.py
tests/test_hstrat/test_auxiliary_lib/test_is_base64.py
tests/test_hstrat/test_auxiliary_lib/test_is_in.py
tests/test_hstrat/test_auxiliary_lib/test_is_nondecreasing.py
tests/test_hstrat/test_auxiliary_lib/test_is_nonincreasing.py
tests/test_hstrat/test_auxiliary_lib/test_is_strictly_decreasing.py
tests/test_hstrat/test_auxiliary_lib/test_is_strictly_increasing.py
tests/test_hstrat/test_auxiliary_lib/test_is_subset.py
tests/test_hstrat/test_auxiliary_lib/test_iter_chunks.py
tests/test_hstrat/test_auxiliary_lib/test_iter_monotonic_equivalencies.py
tests/test_hstrat/test_auxiliary_lib/test_iter_monotonic_equivalencies_reverse.py
tests/test_hstrat/test_auxiliary_lib/test_iter_slices.py
tests/test_hstrat/test_auxiliary_lib/test_make_intersecting_subsets.py
tests/test_hstrat/test_auxiliary_lib/test_memoize_generator.py
tests/test_hstrat/test_auxiliary_lib/test_min_array_dtype.py
tests/test_hstrat/test_auxiliary_lib/test_numpy_fromiter_polyfill.py
tests/test_hstrat/test_auxiliary_lib/test_numpy_index.py
tests/test_hstrat/test_auxiliary_lib/test_numpy_index_flat.py
tests/test_hstrat/test_auxiliary_lib/test_omit_last.py
tests/test_hstrat/test_auxiliary_lib/test_pairwise.py
tests/test_hstrat/test_auxiliary_lib/test_parse_from_numeral_system.py
tests/test_hstrat/test_auxiliary_lib/test_popcount.py
tests/test_hstrat/test_auxiliary_lib/test_raises.py
tests/test_hstrat/test_auxiliary_lib/test_random_choice_generator.py
tests/test_hstrat/test_auxiliary_lib/test_render_to_base64url.py
tests/test_hstrat/test_auxiliary_lib/test_render_to_numeral_system.py
tests/test_hstrat/test_auxiliary_lib/test_reversed_enumerate.py
tests/test_hstrat/test_auxiliary_lib/test_reversed_range.py
tests/test_hstrat/test_auxiliary_lib/test_seed_random.py
tests/test_hstrat/test_auxiliary_lib/test_splicewhile.py
tests/test_hstrat/test_auxiliary_lib/test_swap_rows_and_indices.py
tests/test_hstrat/test_auxiliary_lib/test_to_tril.py
tests/test_hstrat/test_auxiliary_lib/test_unfurl_lineage_with_contiguous_ids.py
tests/test_hstrat/test_auxiliary_lib/test_unpairwise.py
tests/test_hstrat/test_auxiliary_lib/test_unzip.py
tests/test_hstrat/test_auxiliary_lib/test_with_omission.py
tests/test_hstrat/test_auxiliary_lib/test_with_rng_state_context.py
tests/test_hstrat/test_auxiliary_lib/test_zip_strict.py
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-ancestor_list-syntax1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-ancestor_list-syntax2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-ancestor_list-syntax3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-ancestor_list-syntax4.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-duplicate-id1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-duplicate-id2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-duplicate-id3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-mismatched-ancestor_id-ancestor_list-columns1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-mismatched-ancestor_id-ancestor_list-columns2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-mismatched-ancestor_id-ancestor_list-columns3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-missing-ancestor_list-column1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-missing-ancestor_list-column2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-missing-id-column.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-negative-id1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-negative-id2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-negative-id3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-nonexistant-ancestor_id-id1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-nonexistant-ancestor_id-id2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-nonexistant-ancestor_id-id3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-nonexistant-ancestor_id-id4.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny--invalid-nonexistant-ancestor_list-id.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny-empty-list-notation.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny-noncompact1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny-noncompact2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny-uniq.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-asexual-phylogeny.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-ancestor_list-syntax1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-ancestor_list-syntax2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-ancestor_list-syntax3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-ancestor_list-syntax4.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-duplicate-id1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-duplicate-id2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-duplicate-id3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-mismatched-ancestor_id-ancestor_list-columns1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-mismatched-ancestor_id-ancestor_list-columns2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-missing-id-column.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-negative-id1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-negative-id2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-negative-id3.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny--invalid-nonexistant-ancestor_list-id.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny-empty-list-notation.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny-noncompact1.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny-noncompact2.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny-uniq.csv
tests/test_hstrat/test_auxiliary_lib/assets/example-standard-toy-sexual-phylogeny.csv
tests/test_hstrat/test_auxiliary_lib/assets/nk_ecoeaselection.csv
tests/test_hstrat/test_auxiliary_lib/assets/nk_lexicaseselection.csv
tests/test_hstrat/test_auxiliary_lib/assets/nk_tournamentselection.csv
tests/test_hstrat/test_frozen_instrumentation/__init__.py
tests/test_hstrat/test_frozen_instrumentation/test_HereditaryStratigraphicAssemblage.py
tests/test_hstrat/test_frozen_instrumentation/test_HereditaryStratigraphicAssemblageSpecimen.py
tests/test_hstrat/test_frozen_instrumentation/test_HereditaryStratigraphicSpecimen.py
tests/test_hstrat/test_genome_instrumentation/__init__.py
tests/test_hstrat/test_genome_instrumentation/test_HereditaryStratigraphicColumn.py
tests/test_hstrat/test_genome_instrumentation/test_HereditaryStratigraphicColumnBundle.py
tests/test_hstrat/test_genome_instrumentation/test_HereditaryStratum.py
tests/test_hstrat/test_genome_instrumentation/test_stratum_ordered_stores/__init__.py
tests/test_hstrat/test_genome_instrumentation/test_stratum_ordered_stores/test_HereditaryStratumOrderedStoreDict.py
tests/test_hstrat/test_genome_instrumentation/test_stratum_ordered_stores/test_HereditaryStratumOrderedStoreList.py
tests/test_hstrat/test_genome_instrumentation/test_stratum_ordered_stores/test_HereditaryStratumOrderedStoreTree.py
tests/test_hstrat/test_hstrat/__init__.py
tests/test_hstrat/test_hstrat/test_version.py
tests/test_hstrat/test_juxtaposition/__init__.py
tests/test_hstrat/test_juxtaposition/test_calc_definitive_max_rank_of_first_retained_disparity_between.py
tests/test_hstrat/test_juxtaposition/test_calc_definitive_max_rank_of_last_retained_commonality_between.py
tests/test_hstrat/test_juxtaposition/test_calc_definitive_min_ranks_since_first_retained_disparity_with.py
tests/test_hstrat/test_juxtaposition/test_calc_definitive_min_ranks_since_last_retained_commonality_with.py
tests/test_hstrat/test_juxtaposition/test_calc_min_implausible_spurious_consecutive_differentia_collisions_between.py
tests/test_hstrat/test_juxtaposition/test_calc_probability_differentia_collision_between.py
tests/test_hstrat/test_juxtaposition/test_calc_rank_of_first_retained_disparity_between.py
tests/test_hstrat/test_juxtaposition/test_calc_rank_of_last_retained_commonality_between.py
tests/test_hstrat/test_juxtaposition/test_calc_ranks_since_first_retained_disparity_with.py
tests/test_hstrat/test_juxtaposition/test_calc_ranks_since_last_retained_commonality_with.py
tests/test_hstrat/test_juxtaposition/test_diff_retained_ranks.py
tests/test_hstrat/test_juxtaposition/test_get_last_common_stratum_between.py
tests/test_hstrat/test_juxtaposition/test_get_nth_common_rank_between.py
tests/test_hstrat/test_juxtaposition/test_impl/__init__.py
tests/test_hstrat/test_juxtaposition/test_impl/test_dispatch_impl.py
tests/test_hstrat/test_juxtaposition/test_impl_column/__init__.py
tests/test_hstrat/test_juxtaposition/test_impl_column/test_iter_ranks_of_retained_commonality_between_generic.py
tests/test_hstrat/test_juxtaposition/test_impl_specimen/test_calc_rank_of_first_retained_disparity_between_specimen_naive.py
tests/test_hstrat/test_juxtaposition/test_impl_specimen/test_calc_rank_of_last_retained_commonality_between_specimen_naive.py
tests/test_hstrat/test_phylogenetic_inference/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_estimators/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_estimators/test_estimate_rank_of_mrca_maximum_likelihood.py
tests/test_hstrat/test_phylogenetic_inference/test_estimators/test_estimate_rank_of_mrca_naive.py
tests/test_hstrat/test_phylogenetic_inference/test_estimators/test_estimate_rank_of_mrca_unbiased.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_ballpark_patristic_distance_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_ballpark_rank_of_mrca_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_ballpark_ranks_since_mrca_with.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_patristic_distance_bounds_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_rank_of_earliest_detectable_mrca_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_rank_of_mrca_bounds_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_rank_of_mrca_bounds_provided_confidence_level.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_rank_of_mrca_uncertainty_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_ranks_since_earliest_detectable_mrca_with.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_ranks_since_mrca_bounds_provided_confidence_level.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_ranks_since_mrca_bounds_with.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_calc_ranks_since_mrca_uncertainty_with.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_does_definitively_have_no_common_ancestor.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_does_have_any_common_ancestor.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_estimate_patristic_distance_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_estimate_rank_of_mrca_between.py
tests/test_hstrat/test_phylogenetic_inference/test_pairwise/test_estimate_ranks_since_mrca_with.py
tests/test_hstrat/test_phylogenetic_inference/test_population/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_build_distance_matrix_biopython.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_build_distance_matrix_numpy.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_calc_rank_of_earliest_detectable_mrca_among.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_calc_rank_of_mrca_bounds_among.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_calc_rank_of_mrca_uncertainty_among.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_does_definitively_share_no_common_ancestor.py
tests/test_hstrat/test_phylogenetic_inference/test_population/test_does_share_any_common_ancestor.py
tests/test_hstrat/test_phylogenetic_inference/test_priors/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_priors/test_ArbitraryPrior.py
tests/test_hstrat/test_phylogenetic_inference/test_priors/test_BubbleWrappedPrior.py
tests/test_hstrat/test_phylogenetic_inference/test_priors/test_ExponentialPrior.py
tests/test_hstrat/test_phylogenetic_inference/test_priors/test_GeometricPrior.py
tests/test_hstrat/test_phylogenetic_inference/test_priors/test_UniformPrior.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_build_tree.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_build_tree_nj.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_build_tree_trie.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_build_tree_trie_ensemble.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_build_tree_upgma.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/_impl/__init__.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/_impl/_descend_unifurcations.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/_impl/_load_dendropy_tree.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/_impl/_setup_dendropy_tree.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/_impl/_tree_quartet_distance.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/_impl/_tree_unweighted_robinson_foulds_distance.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandchild.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandchild_and_aunt.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandchild_and_auntuncle.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandtriplets.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandtriplets_and_aunt.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandtriplets_and_auntuncle.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandtwins.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandtwins_and_aunt.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/grandtwins_and_auntuncle.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/greatgrandtwins_and_auntuncle.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/justroot.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/nk_ecoeaselection.csv
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/nk_lexicaseselection.csv
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/nk_tournamentselection.csv
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/onlychild.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/triplets.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/assets/twins.newick
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_TrieInnerNode.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_TrieLeafNode.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_append_genesis_organism.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_estimate_origin_times.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_find_chronological_root.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_find_chronological_roots.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_impl/test_time_calibrate_tree.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_AssignDestructionTimeYoungestPlusOneTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_AssignOriginTimeExpectedValueTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_AssignOriginTimeNaiveTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_AssignOriginTimeNodeRankTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_CompoundTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_PeelBackConjoinedLeavesTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_SampleAncestralRollbacksTriePostprocessor.py
tests/test_hstrat/test_phylogenetic_inference/test_tree/test_trie_postprocess/test_bias_adjustment.py
tests/test_hstrat/test_serialization/__init__.py
tests/test_hstrat/test_serialization/test_assemblage_from_records.py
tests/test_hstrat/test_serialization/test_col_to_dataframe.py
tests/test_hstrat/test_serialization/test_col_to_records.py
tests/test_hstrat/test_serialization/test_col_to_specimen.py
tests/test_hstrat/test_serialization/test_pack_differentiae.py
tests/test_hstrat/test_serialization/test_pop_to_assemblage.py
tests/test_hstrat/test_serialization/test_pop_to_dataframe.py
tests/test_hstrat/test_serialization/test_pop_to_records.py
tests/test_hstrat/test_serialization/test_specimen_from_records.py
tests/test_hstrat/test_serialization/test_unassemblage_from_records.py
tests/test_hstrat/test_serialization/test_unpack_differentiae.py
tests/test_hstrat/test_serialization/test_impl/test_col_records_from_pop_records.py
tests/test_hstrat/test_stratum_retention_strategy/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_depth_proportional_resolution_tapered_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_fixed_resolution_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_geom_seq_nth_root_tapered_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_nominal_resolution_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_perfect_resolution_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_pseudostochastic_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_recency_proportional_resolution_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyAbsExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyAbsUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyAbsUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyAbsUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyRelExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyRelUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyRelUpperBoundAtPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcMrcaUncertaintyRelUpperBoundPessimalRank.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcNumStrataRetainedExact.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcNumStrataRetainedUpperBound.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_CalcRankAtColumnIndex.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_GenDropRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_IterRetainedRanks.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_Policy.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_algorithms/test_stochastic_algo/test_PolicySpec.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/__init__.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_MrcaUncertaintyAbsExactEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_MrcaUncertaintyAbsUpperBoundEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_MrcaUncertaintyRelExactEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_MrcaUncertaintyRelUpperBoundEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_NumStrataRetainedExactEvaluator.py
tests/test_hstrat/test_stratum_retention_strategy/test_stratum_retention_policy_evaluators/test_NumStrataRetainedUpperBoundEvaluator.py
tests/test_hstrat/test_stratum_retention_viz/__init__.py
tests/test_hstrat/test_stratum_retention_viz/test_animate/__init__.py
tests/test_hstrat/test_stratum_retention_viz/test_animate/test_policy_panel_animate.py
tests/test_hstrat/test_stratum_retention_viz/test_animate/test_stratum_retention_animate.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/__init__.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_mrca_uncertainty_absolute_barplot.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_mrca_uncertainty_relative_barplot.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_policy_panel_plot.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_strata_retained_frac_lineplot.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_strata_retained_num_lineplot.py
tests/test_hstrat/test_stratum_retention_viz/test_plot/test_stratum_retention_dripplot.py
tests/test_hstrat/test_test_drive/__init__.py
tests/test_hstrat/test_test_drive/test_DecantingPhyloTracker.py
tests/test_hstrat/test_test_drive/test_GarbageCollectingPhyloTracker.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_alifestd.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_biopython.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_dendropy.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_naive.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_networkx.py
tests/test_hstrat/test_test_drive/test_descend_template_phylogeny_posthoc.py
tests/test_hstrat/test_test_drive/test_evolve_fitness_trait_population.py
tests/test_hstrat/test_test_drive/test_perfect_tracking.py
tests/test_hstrat/test_test_drive/assets/grandchild.newick
tests/test_hstrat/test_test_drive/assets/grandchild_and_aunt.newick
tests/test_hstrat/test_test_drive/assets/grandchild_and_auntuncle.newick
tests/test_hstrat/test_test_drive/assets/grandtriplets.newick
tests/test_hstrat/test_test_drive/assets/grandtriplets_and_aunt.newick
tests/test_hstrat/test_test_drive/assets/grandtriplets_and_auntuncle.newick
tests/test_hstrat/test_test_drive/assets/grandtwins.newick
tests/test_hstrat/test_test_drive/assets/grandtwins_and_aunt.newick
tests/test_hstrat/test_test_drive/assets/grandtwins_and_auntuncle.newick
tests/test_hstrat/test_test_drive/assets/greatgrandtwins_and_auntuncle.newick
tests/test_hstrat/test_test_drive/assets/justroot.newick
tests/test_hstrat/test_test_drive/assets/nk_ecoeaselection.csv
tests/test_hstrat/test_test_drive/assets/nk_lexicaseselection.csv
tests/test_hstrat/test_test_drive/assets/nk_tournamentselection.csv
tests/test_hstrat/test_test_drive/assets/onlychild.newick
tests/test_hstrat/test_test_drive/assets/triplets.newick
tests/test_hstrat/test_test_drive/assets/twins.newick