Metadata-Version: 2.4
Name: spaxcr
Version: 0.1.0
Summary: SpaXCR: a toolkit for spatial single-cell TCR/BCR repertoire analysis
Home-page: https://github.com/YoungLi88/SpaXCR
Author: liuyihhha
Author-email: liuyi212@mails.ucas.ac.cn
License: MIT
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: anndata
Requires-Dist: scanpy
Requires-Dist: pandas
Requires-Dist: numpy
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Requires-Dist: statsmodels
Requires-Dist: tqdm
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: venn
Requires-Dist: upsetplot
Requires-Dist: logomaker
Requires-Dist: biopython
Requires-Dist: python-Levenshtein
Dynamic: author
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Dynamic: description
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# SpaXCR

SpaXCR is a toolkit for spatial single-cell TCR/BCR repertoire analysis.

## Installation

```bash
pip install spaxcr
```

## Quick start

```python
import spaxcr

adata = spaxcr.pp.load_xcr(
    clone_file="clone.txt",
    cloneId_barcode_file="clone_barcode.tsv",
)
```

The package exposes four main submodules:

- `spaxcr.pp`: preprocessing, loading, and filtering
- `spaxcr.tl`: analysis tools
- `spaxcr.pl`: visualization
- `spaxcr.extra`: additional helpers
