LICENSE
README.md
pyproject.toml
src/HaemoLynx.egg-info/PKG-INFO
src/HaemoLynx.egg-info/SOURCES.txt
src/HaemoLynx.egg-info/dependency_links.txt
src/HaemoLynx.egg-info/entry_points.txt
src/HaemoLynx.egg-info/requires.txt
src/HaemoLynx.egg-info/top_level.txt
src/haemolynx/__init__.py
src/haemolynx/geometry.py
src/haemolynx/py.typed
src/haemolynx/graph/__init__.py
src/haemolynx/graph/_helpers.py
src/haemolynx/graph/assemble.py
src/haemolynx/graph/automated_vessel_assignment.py
src/haemolynx/graph/boundaries.py
src/haemolynx/graph/branch_order.py
src/haemolynx/graph/build.py
src/haemolynx/graph/collapse.py
src/haemolynx/graph/degree2.py
src/haemolynx/graph/diagnostics.py
src/haemolynx/graph/large_vessels.py
src/haemolynx/graph/optimise.py
src/haemolynx/graph/prune.py
src/haemolynx/graph/reconnect.py
src/haemolynx/graph/smoothing.py
src/haemolynx/graph/validate.py
src/haemolynx/gui/__init__.py
src/haemolynx/gui/_widget.py
src/haemolynx/gui/form.py
src/haemolynx/gui/layers.py
src/haemolynx/gui/napari.yaml
src/haemolynx/gui/progress.py
src/haemolynx/gui/results.py
src/haemolynx/gui/tabs.py
src/haemolynx/haemodynamics/__init__.py
src/haemolynx/haemodynamics/apply.py
src/haemolynx/haemodynamics/automated.py
src/haemolynx/haemodynamics/constriction.py
src/haemolynx/haemodynamics/constriction_strategy.py
src/haemolynx/haemodynamics/pericyte_comparison.py
src/haemolynx/haemodynamics/pericyte_mask.py
src/haemolynx/haemodynamics/pericyte_sweep.py
src/haemolynx/haemodynamics/poiseuille.py
src/haemolynx/haemodynamics/probability.py
src/haemolynx/haemodynamics/resistance.py
src/haemolynx/io/__init__.py
src/haemolynx/io/automated_vessel_assignment.py
src/haemolynx/io/axis_order.py
src/haemolynx/io/ilastik.py
src/haemolynx/io/load.py
src/haemolynx/io/voxel_validation.py
src/haemolynx/parsers/__init__.py
src/haemolynx/parsers/checks.py
src/haemolynx/parsers/cli.py
src/haemolynx/parsers/config.py
src/haemolynx/parsers/schema.py
src/haemolynx/pipeline/__init__.py
src/haemolynx/pipeline/checks.py
src/haemolynx/pipeline/progress.py
src/haemolynx/pipeline/schema.py
src/haemolynx/pipeline/settings.py
src/haemolynx/pipeline/stages.py
src/haemolynx/preprocessing/__init__.py
src/haemolynx/preprocessing/skeleton.py
src/haemolynx/statistics/__init__.py
src/haemolynx/statistics/stats.py
src/haemolynx/statistics/three_dim_distances.py
src/haemolynx/visualization/__init__.py
src/haemolynx/visualization/_helpers.py
src/haemolynx/visualization/dilation_curves.py
src/haemolynx/visualization/geometry.py
src/haemolynx/visualization/pipeline_artifacts.py
src/haemolynx/visualization/plot.py
src/haemolynx/visualization/vtk_io.py
tests/test_anisotropic_voxel_size.py
tests/test_annotation_compat.py
tests/test_automated_vessel_detection_function.py
tests/test_axis_order.py
tests/test_boundary_node_defaults.py
tests/test_branch_comparison.py
tests/test_branch_order_hierarchy.py
tests/test_browser_diagnostics.py
tests/test_carotid_example.py
tests/test_centreline_smoothing.py
tests/test_constriction.py
tests/test_degree2_merge_geometry.py
tests/test_degree2_removal_effectiveness.py
tests/test_example_configs.py
tests/test_flow_reaches_the_viewer.py
tests/test_graph.py
tests/test_graph_assemble.py
tests/test_gui_form.py
tests/test_gui_layers.py
tests/test_gui_progress.py
tests/test_gui_results.py
tests/test_gui_results_performance.py
tests/test_gui_results_widget.py
tests/test_gui_tabs.py
tests/test_gui_widget.py
tests/test_haemodynamics_automated_fwhm.py
tests/test_hemodynamics.py
tests/test_installed_package.py
tests/test_integration_synthetic_vessel_fwhm.py
tests/test_io.py
tests/test_length_measurements.py
tests/test_library_logging.py
tests/test_load_and_validate_vessel_masks.py
tests/test_napari_manifest.py
tests/test_packaging_metadata.py
tests/test_parsers_checks.py
tests/test_parsers_config.py
tests/test_parsers_schema.py
tests/test_pericyte_constriction_seed.py
tests/test_pericyte_mask_integration.py
tests/test_pericyte_sweep.py
tests/test_pipeline_artifacts.py
tests/test_pipeline_invariants.py
tests/test_pipeline_progress.py
tests/test_pipeline_schema_api.py
tests/test_poiseuille_physical_units.py
tests/test_preprocessing.py
tests/test_public_api.py
tests/test_repo_conventions.py
tests/test_resistance_pipeline_wiring.py
tests/test_segment_stage.py
tests/test_shared_helpers.py
tests/test_small_vessel_mask_boundary_labelling.py
tests/test_statistics.py
tests/test_statistics_length_semantics.py
tests/test_synthetic_network_statistics.py
tests/test_synthetic_vessel_assignment_pipeline.py
tests/test_terminal_node_assignment.py
tests/test_three_dim_distances.py
tests/test_tutorial_plots.py
tests/test_visualization.py
tests/test_visualization_geometry.py
tests/test_voxel_validation.py
tests/test_vtk_io.py