Index

A

allen_cache_path (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

AllenCachePathNotSpecifiedError AllenExperimentUtility (class in HuggingMouse.allen_api_utilities)

B

boc (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

C

cre_line_info() (HuggingMouse.allen_api_utilities.AllenExperimentUtility method)

E

execute() (HuggingMouse.make_embeddings.MakeEmbeddings method) (HuggingMouse.regressors.VisionEmbeddingToNeuronsRegressor method)

experiment_container_ids_imaged_areas() (HuggingMouse.allen_api_utilities.AllenExperimentUtility method)

G

generate_random_state() (in module HuggingMouse.utils)

get_data() (HuggingMouse.trial_averaged_data.MakeTrialAveragedData method)

H

hash_df() (in module HuggingMouse.utils) HuggingMouse module HuggingMouse.allen_api_utilities module HuggingMouse.custom_exceptions module HuggingMouse.make_embeddings module

HuggingMouse.regressors module HuggingMouse.trial_averaged_data module HuggingMouse.utils module HuggingMouse.visualizers module

I

info() (HuggingMouse.visualizers.VisualizerDimReduction method)

M

make_container_dict() (in module HuggingMouse.utils) make_regression_data() (HuggingMouse.regressors.VisionEmbeddingToNeuronsRegressor method) make_single_session_data() (HuggingMouse.trial_averaged_data.MakeTrialAveragedData method) MakeEmbeddings (class in HuggingMouse.make_embeddings) MakeTrialAveragedData (class in HuggingMouse.trial_averaged_data) module HuggingMouse HuggingMouse.allen_api_utilities HuggingMouse.custom_exceptions HuggingMouse.make_embeddings HuggingMouse.regressors HuggingMouse.trial_averaged_data HuggingMouse.utils HuggingMouse.visualizers

movie_one_dataset (HuggingMouse.make_embeddings.MakeEmbeddings attribute) movie_three_dataset (HuggingMouse.make_embeddings.MakeEmbeddings attribute) movie_two_dataset (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

P

process_single_trial() (in module HuggingMouse.utils)

process_stims() (HuggingMouse.make_embeddings.MakeEmbeddings method)

R

raw_data_dct (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

regression() (in module HuggingMouse.utils) RegressionOutputCachePathNotSpecifiedError

S

save_to_cache() (HuggingMouse.make_embeddings.MakeEmbeddings method) session_A (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

session_B (HuggingMouse.make_embeddings.MakeEmbeddings attribute) session_C (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

T

transformer_embedding_cache_path (HuggingMouse.make_embeddings.MakeEmbeddings attribute)

TransformerEmbeddingCachePathNotSpecifiedError

U

update_data_index_df() (HuggingMouse.regressors.VisionEmbeddingToNeuronsRegressor method)

V

view_all_cre_lines() (HuggingMouse.allen_api_utilities.AllenExperimentUtility method) view_all_imaged_areas() (HuggingMouse.allen_api_utilities.AllenExperimentUtility method) VisionEmbeddingToNeuronsRegressor (class in HuggingMouse.regressors)

visual_areas_info() (HuggingMouse.allen_api_utilities.AllenExperimentUtility method) visualize() (HuggingMouse.visualizers.VisualizerDimReduction method) VisualizerDimReduction (class in HuggingMouse.visualizers)