LICENSE
README.md
pyproject.toml
pileup_aadr/__init__.py
pileup_aadr/__main__.py
pileup_aadr/chrom_lengths.py
pileup_aadr/cli.py
pileup_aadr/concurrency.py
pileup_aadr/counters.py
pileup_aadr/coverage_cmd.py
pileup_aadr/coverage_impl.py
pileup_aadr/dict_resolve.py
pileup_aadr/errors.py
pileup_aadr/extract_cmd.py
pileup_aadr/extract_orch.py
pileup_aadr/format_detect.py
pileup_aadr/inspect_cmd.py
pileup_aadr/inspect_impl.py
pileup_aadr/lift.py
pileup_aadr/logging_config.py
pileup_aadr/output.py
pileup_aadr/pileup_call.py
pileup_aadr/ref_resolve.py
pileup_aadr/rejoin.py
pileup_aadr/shard.py
pileup_aadr/sites_vcf.py
pileup_aadr/tool_wrapper.py
pileup_aadr/transform.py
pileup_aadr/types.py
pileup_aadr/validate_cmd.py
pileup_aadr/validate_impl.py
pileup_aadr.egg-info/PKG-INFO
pileup_aadr.egg-info/SOURCES.txt
pileup_aadr.egg-info/dependency_links.txt
pileup_aadr.egg-info/entry_points.txt
pileup_aadr.egg-info/requires.txt
pileup_aadr.egg-info/top_level.txt
pileup_aadr/data/hg19ToHg38.over.chain.gz
pileup_aadr/data/hg19ToHg38.over.chain.gz.sha256
tests/test_chrom_lengths.py
tests/test_concurrency.py
tests/test_coverage.py
tests/test_dict_resolve.py
tests/test_errors.py
tests/test_extract_cmd.py
tests/test_extract_orch.py
tests/test_format_detect.py
tests/test_inspect_cmd.py
tests/test_lift_chain.py
tests/test_lift_stage1.py
tests/test_output.py
tests/test_pileup_call.py
tests/test_ref_resolve.py
tests/test_rejoin.py
tests/test_shard.py
tests/test_sites_vcf.py
tests/test_tool_wrapper.py
tests/test_transform.py
tests/test_validate_cmd.py