README.md
setup.py
pDeepXL/__init__.py
pDeepXL/featurer.py
pDeepXL/mass_util.py
pDeepXL/model.py
pDeepXL/plot.py
pDeepXL/predict.py
pDeepXL/utils.py
pDeepXL.egg-info/PKG-INFO
pDeepXL.egg-info/SOURCES.txt
pDeepXL.egg-info/dependency_links.txt
pDeepXL.egg-info/top_level.txt
pDeepXL/configs/aa.ini
pDeepXL/configs/config.ini
pDeepXL/configs/element.ini
pDeepXL/examples/cleavable/predicted_clv_spectrum.png
pDeepXL/examples/cleavable/data/clv_dataset.txt
pDeepXL/examples/cleavable/predict_results/clv_predicted_res.txt
pDeepXL/examples/cleavable/predict_results/imgs/B180703_03_Lumos_FO_IN_130_MycoDSSO_SCX14_hSAX_f19_rep1.17581.17581.5.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/B180705_39_Lumos_FO_IN_130_MycoDSSO_SCX14_hSAX_f26t27_rep2.28568.28568.3.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/B180706_31_Lumos_FO_IN_130_MycoDSSO_SCX15_hSAX_f23_rep1.18555.18555.4.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/B180723_03_Lumos_FO_IN_130_MycoDSSO_SCX14_hSAX_f7t8_rep2.4813.4813.3.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/B180816_04_Lumos_LS_IN_130_MycoDSSO_SCX16_hSAX_f3t6_rep1.20325.20325.5.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/HEK293_FAIMS_40_55_70_Fr2.44804.44804.4.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/HEK293_FAIMS_506075_Fr2_BioRep2.36106.36106.4.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/HEK293_FAIMS_50_60_75_Fr5.31575.31575.4.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/HEK293_FAIMS_60_70_80_Fr2.32448.32448.3.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/HEK293_noFAIMS_Fr3_BioRep2.41208.41208.5.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/R1_B1.20482.20482.4.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/R1_B2.24489.24489.5.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/R1_B6.9410.9410.3.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/R1_B8.10325.10325.4.0.dta.png
pDeepXL/examples/cleavable/predict_results/imgs/R3_A11.31514.31514.4.0.dta.png
pDeepXL/examples/non_cleavable/predicted_non_clv_spectrum.png
pDeepXL/examples/non_cleavable/data/non_clv_dataset.txt
pDeepXL/examples/non_cleavable/predict_results/non_clv_predicted_res.txt
pDeepXL/examples/non_cleavable/predict_results/imgs/A_Linden_231018_251018_ymitos_glud0-glyd4_10.41750.41750.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/AspN-Trypsin-2-2-1.7532.7532.3.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/C_Lee_011216_ymitos_WT_Gly_BS3_XL_12_R2.57721.57721.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/C_Lee_090916_ymitos_BS3_XL_B13_C1_13_Rep1.14188.14188.3.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/C_Lee_300117_ymitos_Glu_BS3_XL_12_R1.20669.20669.3.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/GluC-Trypsin-2-1.13172.13172.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/HEK293_DSS_FAIMS_405060_Fr1.36531.36531.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/HEK293_DSS_FAIMS_4055_Fr3.40215.40215.5.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/HEK293_DSS_FAIMS_5060_Fr4.29122.29122.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/I_Parfentev_A_Linden_260617_180717_ymitos_WTGly_A13b.30949.30949.3.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/ecoli_enri0228_E_bin5_7ul.11740.11740.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/ecoli_enri0228_E_bin5_7ul_re.19880.19880.5.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/ecoli_enri0302_E_bin6_7ul_re.8379.8379.3.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/ecoli_enri0302_E_bin7_7ul.14600.14600.4.0.dta.png
pDeepXL/examples/non_cleavable/predict_results/imgs/ecoli_enri0302_E_bin8_7ul_re.5306.5306.3.0.dta.png
pDeepXL/pt/clv_model.pt
pDeepXL/pt/non_clv_model.pt
tests/__init__.py
tests/test_predict_batch.py
tests/test_predict_single.py