dandelion.plotting.clone_rarefaction

dandelion.plotting.clone_rarefaction(self, color, clone_key=None, palette=None, figsize=(6, 4), save=None)[source]

Plots rarefaction curve for cell numbers vs clone size.

Parameters
  • self (AnnData, Dandelion) – AnnData or Dandelion object.

  • color (str) – Column name to split the calculation of clone numbers for a given number of cells for e.g. sample, patient etc.

  • clone_key (str, optional) – Column name specifying the clone_id column in metadata/obs.

  • palette (Sequence, optional) – Color mapping for unique elements in color. Will try to retrieve from AnnData .uns slot if present.

  • figsize (Tuple[Union[int,float], Union[int,float]]) – Size of plot.

  • save (str, optional) – Save path.

Returns

Return type

rarefaction curve plot.