Overview
Installation
Required database
External softwares
Basic requirements
Acknowledgements
Tutorial:
Pre-processing
Filtering
Cellranger V4 onwards
BCR clustering
Interoperability with
scirpy
dandelion
scirpy
Visualizing BCR data
Calculating diversity and mutation
Dandelion
class
Running from R
API:
Preprocessing:
pp
Preprocessing (external):
pp.external
Tools:
tl
Plotting:
pl
Utilities:
utl
Dandelion
Logging
dandelion
»
Overview: module code
All modules for which code is available
dandelion.logging._logging
dandelion.plotting._plotting
dandelion.preprocessing._preprocessing
dandelion.preprocessing.external._preprocessing
dandelion.tools._diversity
dandelion.tools._network
dandelion.tools._tools
dandelion.utilities._core
dandelion.utilities._io
dandelion.utilities._utilities