dandelion.utilities.Dandelion¶
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class
dandelion.utilities.
Dandelion
(data=None, metadata=None, germline=None, distance=None, edges=None, layout=None, graph=None, initialize=True, **kwargs)[source]¶ Dandelion class object.
Main class object storing input/ouput slots for all functions.
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__init__
(data=None, metadata=None, germline=None, distance=None, edges=None, layout=None, graph=None, initialize=True, **kwargs)[source]¶ Initialize self. See help(type(self)) for accurate signature.
Methods
__init__
([data, metadata, germline, …])Initialize self.
copy
()Performs a deep copy of all slots in Dandelion class.
update_germline
([corrected, germline, org])Update germline reference with corrected sequences and store in Dandelion object.
write_h5
([filename, complib, compression, …])Writes a Dandelion class to .h5 format.
write_pkl
([filename])Writes a Dandelion class to .pkl format.
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