LICENSE
README.md
pyproject.toml
sfprov.egg-info/PKG-INFO
sfprov.egg-info/SOURCES.txt
sfprov.egg-info/dependency_links.txt
sfprov.egg-info/entry_points.txt
sfprov.egg-info/requires.txt
sfprov.egg-info/top_level.txt
tests/test_api.py
tests/test_dag_parser.py
tests/test_extractor_registry.py
tests/test_fasta_extractor.py
tests/test_fastq_extractor.py
tests/test_init_cmd.py
tests/test_lineage_parsing.py
tests/test_neo4j_writer.py
tests/test_ro_crate_parsing.py
tests/test_sam_extractor.py
tests/test_vcf_extractor.py
workflow_provenance/__init__.py
workflow_provenance/_api.py
workflow_provenance/api.py
workflow_provenance/cli.py
workflow_provenance/export.py
workflow_provenance/formatting.py
workflow_provenance/merge.py
workflow_provenance/models.py
workflow_provenance/query.py
workflow_provenance/utils.py
workflow_provenance/assets/__init__.py
workflow_provenance/assets/docker-compose.yml
workflow_provenance/commands/__init__.py
workflow_provenance/commands/ingest_cmd.py
workflow_provenance/commands/init_cmd.py
workflow_provenance/commands/query_cmd.py
workflow_provenance/extractors/__init__.py
workflow_provenance/extractors/base_extractor.py
workflow_provenance/extractors/bed_extractor.py
workflow_provenance/extractors/bigwig_extractor.py
workflow_provenance/extractors/excel_extractor.py
workflow_provenance/extractors/fasta_extractor.py
workflow_provenance/extractors/fastq_extractor.py
workflow_provenance/extractors/gtf_extractor.py
workflow_provenance/extractors/pdf_extractor.py
workflow_provenance/extractors/plain_text_extractor.py
workflow_provenance/extractors/registry.py
workflow_provenance/extractors/sam_extractor.py
workflow_provenance/extractors/tsv_extractor.py
workflow_provenance/extractors/vcf_extractor.py
workflow_provenance/io/__init__.py
workflow_provenance/io/dag_loader.py
workflow_provenance/io/lineage_loader.py
workflow_provenance/io/ro_crate_loader.py
workflow_provenance/parsers/__init__.py
workflow_provenance/parsers/dag_parser.py
workflow_provenance/parsers/lineage_parser.py
workflow_provenance/parsers/ro_crate_parser.py
workflow_provenance/sinks/__init__.py
workflow_provenance/sinks/neo4j_writer.py
workflow_provenance/sinks/opensearch_writer.py