{% extends 'report/layouts/base.html' %}

{% block main %}
<div class="container">
	<div class="page-header">
		<h1>Gene: {{ gene_name or gene_id }}</h1>
	</div>

	{% for tx_id, tx_group in tx_groups %}
		{% set txgroup_list = tx_group|list %}
		<div class="row">
			<div class="col-md-12">
				<div class="panel panel-default">
					<div class="panel-heading">
						Transcript: <strong>{{ tx_id }}</strong>
					</div>
					<div class="table-responsive">
						<table class="table table-bordered">
							<thead>
								<tr>
									<th>Sample</th>
									<th>Mean coverage</th>
									{% for level, _ in levels.items() %}
										<th>Completeness {{ level }}x [%]</th>
									{% endfor %}
								</tr>
							</thead>
							<tbody>
								{% for transcript in txgroup_list %}
									<tr>
										<td>
											{{ transcript.sample.name or transcript.sample_id }}
										</td>
										<td>{{ transcript.mean_coverage|round(2) }}</td>
										{% for _, field_id in levels.items() %}
											<td>
												{% if transcript|attr(field_id) is number %}
													{{ transcript|attr(field_id)|round(2) }}
												{% endif %}
											</td>
										{% endfor %}
									</tr>
								{% endfor %}
							</tbody>
						</table>
					</div>
					{% for transcript in txgroup_list %}
						<ul class="list-group">
							{% if transcript._incomplete_exons %}
								<li class="list-group-item">
									Incomplete exons for <strong>{{ transcript.sample.name or transcript.sample_id }}</strong> at <strong>{{ transcript.threshold }}x</strong>
								</li>
							{% endif %}
						</ul>
						<div class="table-responsive">
							<table class="table table-bordered">
								<tbody>
									{% for exon_group in transcript.incomplete_exons|batch(5) %}
										<tr>
											{% for exon in exon_group %}
												<td>
													{% if link %}
														<a href="{{ url_for(link, start=exon.start, end=exon.end, chrom=exon.chrom, sample=transcript.sample_id, group=transcript.sample.group_id) }}" target="_blank">
															{{ exon.chrom }}:{{ exon.start }}-{{ exon.end }}
														</a>
													{% else %}
														{{ exon.chrom }}:{{ exon.start }}-{{ exon.end }}
													{% endif %}
													<span class="float-right">
														<strong>{{ exon.completeness|round(2) }}%</strong>
													</span>
												</td>
											{% endfor %}
										</tr>
									{% endfor %}
								</tbody>
							</table>
						</div>
					{% endfor %}
				</div>
			</div>
		</div>
	{% endfor %}
</div>

{% endblock %}