LICENSE
MANIFEST.in
README.md
protein_mpnn_run.py
protein_mpnn_utils.py
pyproject.toml
ca_model_weights/__init__.py
ca_model_weights/v_48_002.pt
ca_model_weights/v_48_010.pt
ca_model_weights/v_48_020.pt
docs/mps/MMseqs2_MPS_Feasibility_Analysis.md
docs/mps/ProteinMPNN_MPS_Notes.md
examples/submit_example_1.sh
examples/submit_example_2.sh
examples/submit_example_3.sh
examples/submit_example_3_score_only.sh
examples/submit_example_3_score_only_from_fasta.sh
examples/submit_example_4.sh
examples/submit_example_4_non_fixed.sh
examples/submit_example_5.sh
examples/submit_example_6.sh
examples/submit_example_7.sh
examples/submit_example_8.sh
examples/submit_example_pssm.sh
helper_scripts/__init__.py
helper_scripts/assign_fixed_chains.py
helper_scripts/cif_to_pdb.py
helper_scripts/make_bias_AA.py
helper_scripts/make_bias_per_res_dict.py
helper_scripts/make_fixed_positions_dict.py
helper_scripts/make_pos_neg_tied_positions_dict.py
helper_scripts/make_pssm_input_dict.py
helper_scripts/make_tied_positions_dict.py
helper_scripts/parse_multiple_chains.py
helper_scripts/other_tools/make_omit_AA.py
helper_scripts/other_tools/make_pssm_dict.py
inputs/PDB_complexes/pdbs/3HTN.pdb
inputs/PDB_complexes/pdbs/4YOW.pdb
inputs/PDB_homooligomers/pdbs/4GYT.pdb
inputs/PDB_homooligomers/pdbs/6EHB.pdb
inputs/PDB_monomers/pdbs/5L33.pdb
inputs/PDB_monomers/pdbs/6MRR.pdb
proteinmpnn_mps.egg-info/PKG-INFO
proteinmpnn_mps.egg-info/SOURCES.txt
proteinmpnn_mps.egg-info/dependency_links.txt
proteinmpnn_mps.egg-info/entry_points.txt
proteinmpnn_mps.egg-info/requires.txt
proteinmpnn_mps.egg-info/top_level.txt
soluble_model_weights/__init__.py
soluble_model_weights/excluded_PDBs.csv
soluble_model_weights/v_48_002.pt
soluble_model_weights/v_48_010.pt
soluble_model_weights/v_48_020.pt
soluble_model_weights/v_48_030.pt
vanilla_model_weights/__init__.py
vanilla_model_weights/v_48_002.pt
vanilla_model_weights/v_48_010.pt
vanilla_model_weights/v_48_020.pt
vanilla_model_weights/v_48_030.pt