A01	1565455	1565455	C	U	CCCACATACAGTCCCACTTCGCCCTACTACAGTCCCACCTCGCCCACATA	AGTCCCACTTCGCCTTACTACAGTCCCACCTCGCCCACATACAGTCCCGC	BnaA01T0027200ZS	MATCHED_REF	synonymous_variant	1	-2.97	19.51	-3.47	20.69	0.927494	BnaA01T0027200ZS_1565455
A01	2389098	2389098	C	U	ACGCCACAACCTTAAACCCTAACACCAAACTAACAACAACAAAGCTCCTC	CTTTAATCCACCAAACCCTCACCAAACCCTTCTCCCAATCCACCACCATC	BnaA01T0044500ZS	MATCHED_REF	missense_variant	1	-1.15	2.06	-1.38	1.68	0.999735	BnaA01T0044500ZS_2389098
A01	2389110	2389110	C	G	TAAACCCTAACACCAAACTAACAACAACAAAGCTCCTCCCTTTAATCCAC	AAACCCTCACCAAACCCTTCTCCCAATCCACCACCATCCCCACGAAACAA	BnaA01T0044500ZS	MATCHED_REF	missense_variant	1	-1.15	2.98	-1.15	4.91	0.936905	BnaA01T0044500ZS_2389110
A01	2393220	2393220	C	U	ATTCTCCTTAACTTCGCCTTCACCAAGCTCCACTCTTTCCTATTCCAACA	CCACCAATTCCCGAACCCGTCTTCTTCATTTCCCGTCTCGTTATCTGTCT	BnaA01T0044700ZS	MATCHED_REF	missense_variant	1	-4.71	11.69	-4.71	11.78	0.999981	BnaA01T0044700ZS_2393220
A01	6353673	6353673	C	U	CTCATCTGCTCCTACTCCTCCCCCTCCCCTTCCCTCTCTCCCGCCATTTC	ACTTCCGTTAAACTCAACCTCTCATCCTCCTTCCTCCCTTCGTACTCACT	BnaA01T0109200ZS	MATCHED_REF	synonymous_variant	1	-1.54	3.17	-1.54	3.33	0.999789	BnaA01T0109200ZS_6353673
A01	6353697	6353697	A	U	TCCCCTTCCCTCTCTCCCGCCATTTCCACTTCCGTTAAACTCAACCTCTC	TCCTCCTTCCTCCCTTCGTACTCACTCTCCACCACCCCCTCAGCTTCTCA	BnaA01T0109200ZS	MATCHED_REF	synonymous_variant	1	-1.54	3.29	-1.54	3.28	0.999999	BnaA01T0109200ZS_6353697
A01	8566071	8566071	C	U	AAACTACCCTTCGCTCTTTCTCTCTTCTTCTCACTCTCTCTCCTCCTCGT	TTCTTCTTCGCCTTCCCGTTAACTTCCCTCCGCCGTCCCGTCTCCTCCGT	BnaA01T0143900ZS	MATCHED_REF	synonymous_variant	1	-0.35	8.36	-2.03	7.43	0.650059	BnaA01T0143900ZS_8566071
A01	29931489	29931489	C	A	TTCACCACCACCGCCAGTCCACTCTCCTCCACCACCAGTCCACTCTCCGC	GCCACCACCAATTTTCTCTCCACCACCACCTACACCAATCTACTCTCCAC	BnaA01T0322700ZS	MATCHED_REF	missense_variant	1	-3.35	6.02	-3.35	6.12	0.998912	BnaA01T0322700ZS_29931489
A01	34490015	34490015	C	U	CGATCCAAGACTTCTGTATACCAAAACCAATCACATCTCCTCATCACCAT	CCTTCTCCACAAATCTCCCATGCAAAAACTCCTCCGAACTAACCACCGAA	BnaA01T0381600ZS	MATCHED_REF	missense_variant	1	-2.62	14.51	-2.62	15.10	0.991398	BnaA01T0381600ZS_34490015
A02	3206647	3206647	U	C	ATATATTTCTCTTACAATAATTTATTCAATTCTTTTATTTATTCAAATAT	ACTCCTAAATCTTAATCATTACTATTATTATATTTACCATTTTGACTTTT	BnaA02T0060200ZS	MATCHED_REF	intron_variant	1	-7.57	17.82	-7.85	17.28	0.990084	BnaA02T0060200ZS_3206647
A02	4113135	4113135	U	C	CTGTTCCTCATTTCTCCCTCCTCCCTAAAGTCTCACCCTTTCATCCTCCC	TCTTATCAACACCACGAAAACTCTCTCTCTTTCACTCTACTACTTGTTCT	BnaA02T0077900ZS	MATCHED_REF	missense_variant	1	-2.91	12.30	-2.91	12.17	0.999804	BnaA02T0077900ZS_4113135
A02	4113159	4113159	U	C	CTAAAGTCTCACCCTTTCATCCTCCCTTCTTATCAACACCACGAAAACTC	CTCTCTTTCACTCTACTACTTGTTCTCCTCTCCAATCCTCCCCCAATTCT	BnaA02T0077900ZS	MATCHED_REF	missense_variant	1	-4.10	9.26	-4.10	9.19	0.999952	BnaA02T0077900ZS_4113159
A02	4925019	4925019	A	U	TAAAACCTCTCTCTCTTATAAATTGCCCCTAAACCTCTCCTTCTTCTACA	CATTCTCTCGCAGCCCTAAAACTTCCTCGCCTCCCTCTCTCGAATCTCTT	BnaA02T0093700ZS	MATCHED_REF	splice_polypyrimidine_tract_variant,intron_variant	1	-2.43	8.48	-2.43	8.19	0.999704	BnaA02T0093700ZS_4925019
A02	5286436	5286436	A	U	TTTCTTTTTCTCTCAAACTACTCACTGCCCAAAGCCACAACACAACACAC	CACTATACTCTACCCACTTCTCTCTCTCTCACATCTCCCACTGTTTACTC	BnaA02T0099800ZS	MATCHED_REF	5_prime_UTR_variant	1	-2.18	5.55	-2.18	5.55	0.999965	BnaA02T0099800ZS_5286436
A02	5286439	5286439	C	U	CTTTTTCTCTCAAACTACTCACTGCCCAAAGCCACAACACAACACACACA	TATACTCTACCCACTTCTCTCTCTCTCACATCTCCCACTGTTTACTCTTT	BnaA02T0099800ZS	MATCHED_REF	5_prime_UTR_variant	1	-2.18	6.35	-2.18	6.50	0.999096	BnaA02T0099800ZS_5286439
A02	7030155	7030155	G	A	TTTAAACCCTTCACCTTCTTCTTACCCTACTACATCATCTTCTTCCCCAA	CTTTCTTCACTCATATTACACTCCTAATTCTTCTTCCACCTCCTTTCATA	BnaA02T0130400ZS	MATCHED_REF	missense_variant	1	-0.69	5.63	0.00	1.85	0.723879	BnaA02T0130400ZS_7030155
A02	7872699	7872699	U	C	CGCTTTCATCATTCAATATCTTCTTCTTCTTCTTCCATCTCCATTATCAT	ACTCTTTCTCTCTCTCTCCTTTTGTTTCTTGGTTCGTTTTTTCTCTTCTT	BnaA02T0141300ZS	MATCHED_REF	5_prime_UTR_variant	1	-3.77	9.89	-3.77	9.53	0.998181	BnaA02T0141300ZS_7872699
A02	14465999	14465999	C	A	AGTTCCGTTTTCACTTTTTATTTTCTGCTCTTTCAACTTTTTTTTTATCT	TCTCTTTTACTCTATTATTTACCAATCACACTCTATAAATCAAATTGAAA	BnaA02T0225500ZS	MATCHED_REF	intron_variant	1	-5.11	10.61	-5.11	10.72	0.999946	BnaA02T0225500ZS_14465999
A02	25484678	25484678	U	C	GCAATTTCACTTCTCTTTATCCTCTCTCTCGTTTTCTCACTTACAATAAA	TCTCTTCACTTCATTATGCTTTTATCAACTCCATTCTTCTTTGTTCTGAA	BnaA02T0287300ZS	MATCHED_REF	intron_variant	1	-6.19	6.74	-4.53	14.76	0.882841	BnaA02T0287300ZS_25484678
A02	29511923	29511923	A	G	GCCACCTCCTAGCTCTCTCCCTCCTCTTCCTCCTCCCCATCTCCTTCTCC	TCACCGTCTACCCCTCCATCTCCCGCCTCATCATCAACCAATCCTCCCCT	BnaA02T0327000ZS	MATCHED_REF	missense_variant	1	-1.27	1.43	-1.27	2.69	0.946273	BnaA02T0327000ZS_29511923
A02	29511956	29511956	A	G	TCCCCATCTCCTTCTCCATCACCGTCTACCCCTCCATCTCCCGCCTCATC	TCAACCAATCCTCCCCTTCTCACACCACCTTCTCCCTCCTCAAATCCCAC	BnaA02T0327000ZS	MATCHED_REF	missense_variant	1	0.00	0.69	-0.22	2.86	0.516073	BnaA02T0327000ZS_29511956
A02	29511975	29511975	C	A	CACCGTCTACCCCTCCATCTCCCGCCTCATCATCAACCAATCCTCCCCTT	TCACACCACCTTCTCCCTCCTCAAATCCCACAACGATATCGATCCCAACA	BnaA02T0327000ZS	MATCHED_REF	missense_variant	1	-1.76	5.63	-2.59	5.18	0.623869	BnaA02T0327000ZS_29511975
A02	29511984	29511984	C	A	CCCCTCCATCTCCCGCCTCATCATCAACCAATCCTCCCCTTCTCACACCA	CTTCTCCCTCCTCAAATCCCACAACGATATCGATCCCAACACCGTCCTCC	BnaA02T0327000ZS	MATCHED_REF	missense_variant	1	-1.84	7.05	-1.84	7.13	0.999763	BnaA02T0327000ZS_29511984
A02	29811957	29811957	C	G	ACAACTTCGCCTCCCCACCTCCTGAACCACCCCTTCCCTCTCCTTTCATC	TCTTCTCAAGCCCCAAACCCGAACTCCCCCTCAAACCATCTCTCCTCATC	BnaA02T0331100ZS	MATCHED_REF	missense_variant	1	-2.36	9.29	-2.95	9.55	0.867081	BnaA02T0331100ZS_29811957
A02	29811967	29811967	G	A	CTCCCCACCTCCTGAACCACCCCTTCCCTCTCCTTTCATCCTCTTCTCAA	CCCCAAACCCGAACTCCCCCTCAAACCATCTCTCCTCATCATAGCCCTAT	BnaA02T0331100ZS	MATCHED_REF	missense_variant	1	-0.36	7.46	-0.36	5.77	0.933376	BnaA02T0331100ZS_29811967
A02	31128040	31128040	U	C	ACAAATCCAAGAGAAATGAAGAAGAGAGAAAAGATCACGAAAGAAACAAA	TGAAGAATGAAGAAGAGAAAAAGAAACAGAAAGAGCACGAAGAACACATA	BnaA02T0349400ZS	MATCHED_REF	synonymous_variant	1	-3.42	10.41	-2.81	11.57	0.832438	BnaA02T0349400ZS_31128040
A02	33128697	33128697	C	A	GTCTCTTAACTTTTATTAATCAAATCATAAAACTCATCAACTACATAAAA	CATAGCCTCAAAAACTATATATAATAAAACATAAAAACCCTAAAACAATA	BnaA02T0377600ZS	MATCHED_REF	intron_variant	1	-3.83	15.27	-3.83	15.59	0.999172	BnaA02T0377600ZS_33128697
A03	2928162	2928162	A	U	ACCACAACACTCTTCCTCTTCTTCATTGCCTTCTTTAAATTTCAACAAAT	CTCCAACTCTTTCCAAAACTTCCCATCCACAAGCCTAAATTTCTCTTCTA	BnaA03T0061600ZS	MATCHED_REF	missense_variant	1	0.00	7.17	-0.97	5.82	0.852072	BnaA03T0061600ZS_2928162
A03	6143421	6143421	C	U	ATCGTTCTCATTAAACCCTTCATCTTCGTCATATCCTACAACAACTTCTT	CCCAAGCTTTCTTCACTCCCACTACACTCCTAATTCTTCTTCCACCTCCT	BnaA03T0123300ZS	MATCHED_REF	missense_variant	1	-0.84	8.10	-0.84	7.97	0.998999	BnaA03T0123300ZS_6143421
A03	10923949	10923949	C	U	TCCCAAACCCTAGCTTCTCCCAACACCTCTCCCTCCTTCCGATCCCCCTT	CTCAGATTCAACTCCTCCTCCACTCCCAAACCCCTCTCCACTCGCTCCTC	BnaA03T0209300ZS	MATCHED_REF	synonymous_variant	1	-2.55	6.12	-2.55	7.29	0.856423	BnaA03T0209300ZS_10923949
A03	10923965	10923965	U	C	CTCCCAACACCTCTCCCTCCTTCCGATCCCCCTTCCTCAGATTCAACTCC	CCTCCACTCCCAAACCCCTCTCCACTCGCTCCTCCTCCTCCCTCATCGCA	BnaA03T0209300ZS	MATCHED_REF	missense_variant	1	-3.62	3.07	-3.62	3.04	0.999997	BnaA03T0209300ZS_10923965
A03	10923969	10923969	C	U	CAACACCTCTCCCTCCTTCCGATCCCCCTTCCTCAGATTCAACTCCTCCT	CACTCCCAAACCCCTCTCCACTCGCTCCTCCTCCTCCCTCATCGCACGCT	BnaA03T0209300ZS	MATCHED_REF	missense_variant	1	-3.62	4.71	-3.62	5.09	0.999471	BnaA03T0209300ZS_10923969
A03	10956684	10956684	G	A	CCATGAAATCTCCTCCTCCACCATACTACTATCACTCACCACCTCCACCA	TAAAGTCTCCACCACCACCACCATATTATTACCATTCACCACCTCCTCCA	BnaA03T0209700ZS	MATCHED_REF	missense_variant	1	-2.47	9.91	-0.76	8.87	0.639689	BnaA03T0209700ZS_10956684
A03	11137636	11137636	C	U	TCCAACGCCGTCCATCCCTCACCACCTCCTCCTCCACCAGCCTCAATCCC	ACTTTTCCCGCCAACATCTCTTCTCTCTTCTTCCCACCTCACAACTCATC	BnaA03T0213600ZS	MATCHED_REF	synonymous_variant	1	-0.18	4.39	-0.18	4.40	0.999995	BnaA03T0213600ZS_11137636
A03	11190900	11190900	A	C	TCTCATTCGCAGCATCTCCTCTCTCTCTTCCCAACAACACTCCGCCTCAC	AAACCTTCTCTCGCCTCTCCTTTCCTTCTCTCTCCTCCTCCTCCATCTCC	BnaA03T0214900ZS	MATCHED_REF	5_prime_UTR_variant	1	-1.01	5.12	-1.01	5.06	0.999918	BnaA03T0214900ZS_11190900
A03	11342941	11342941	U	C	TCTCAAGTAAACTTAACCTCCTCCGCCATCTTCACCGTGTCTTCCTCCTA	CCCGCCGCCTCGTTTTCCTCATCTACAACATCTTCTTCTTCTTCTTCATC	BnaA03T0218500ZS	MATCHED_REF	synonymous_variant	1	-3.61	12.40	-3.61	12.36	0.999792	BnaA03T0218500ZS_11342941
A03	11451638	11451638	C	U	AGGTTTCAATCATCTCCCATCAAGTTCGCATTCATCTCCTTCTTCCTCCT	TGTCTCATCTCCCTACTCTTCCTCCGATCTCCACCGTCCGTTAACTCCTC	BnaA03T0220200ZS	MATCHED_REF	synonymous_variant	1	-5.16	15.67	-5.16	17.13	0.990131	BnaA03T0220200ZS_11451638
A03	20055710	20055710	C	U	CTCCTCGTCCTCTTCATCTTCTCACTCATTTCCATTTCTTATGCCATCCT	CCGAAACTACACAAACCCTAATTACAACAACCCACCACCATATTTTCCAA	BnaA03T0375400ZS	MATCHED_REF	missense_variant	1	-1.06	8.93	-1.06	8.98	0.999708	BnaA03T0375400ZS_20055710
A03	21140061	21140061	U	G	CCTCGTCACATTTATATACTTCCATCCTTCTCTCTACCCACTTCCTCTTC	ATTCGATCCTTTCAACCATCCCCCAACCATCTCAATCTCAATCTCTCCTT	BnaA03T0392700ZS	MATCHED_REF	synonymous_variant	1	-1.03	4.18	-2.97	8.84	0.460755	BnaA03T0392700ZS_21140061
A03	24948474	24948474	U	C	TGCTCCTCCTCCTCCAGACTCATCTCTCCTCCTTCCCTCCGCCCCGCCAT	TCCACCTCCACCAACCTCAAAACCCTAAACCTCTCCTCCTCCTTCCTCCC	BnaA03T0457600ZS	MATCHED_REF	synonymous_variant	1	-1.65	4.97	-1.65	4.97	0.999996	BnaA03T0457600ZS_24948474
A03	24948485	24948485	C	G	CTCCAGACTCATCTCTCCTCCTTCCCTCCGCCCCGCCATTTCCACCTCCA	CAACCTCAAAACCCTAAACCTCTCCTCCTCCTTCCTCCCTTCCTACTCCC	BnaA03T0457600ZS	MATCHED_REF	missense_variant	1	-1.65	3.92	-1.91	5.78	0.905439	BnaA03T0457600ZS_24948485
A03	24948508	24948508	U	G	CCCTCCGCCCCGCCATTTCCACCTCCACCAACCTCAAAACCCTAAACCTC	CCTCCTCCTTCCTCCCTTCCTACTCCCTCTCCACCCTCTCCGCCTCCTCC	BnaA03T0457600ZS	MATCHED_REF	missense_variant	1	-0.66	1.19	-0.66	2.25	0.951597	BnaA03T0457600ZS_24948508
A03	24966424	24966424	U	C	AACCTGTGTCTTCTCTGTCGTTTTCTTCCTCCTCTTCCTCTCTCTACCTC	CCCCTCCCTCTCCCAACCATCGCACTCCGTCTACAACTCCTTCCTCAAAT	BnaA03T0458200ZS	MATCHED_REF	missense_variant	1	-3.29	10.96	-3.29	10.75	0.993102	BnaA03T0458200ZS_24966424
A03	24966431	24966431	C	U	GTCTTCTCTGTCGTTTTCTTCCTCCTCTTCCTCTCTCTACCTCTCCCCTC	CTCTCCCAACCATCGCACTCCGTCTACAACTCCTTCCTCAAATGCTTCTC	BnaA03T0458200ZS	MATCHED_REF	synonymous_variant	1	-4.49	3.00	-4.49	3.02	0.999998	BnaA03T0458200ZS_24966431
A03	27856738	27856738	U	A	TGAACCCTAAACCCTAATATAAGCCATCAACCCAAATATAAACTCTAAAC	CTAATCACTAAATTATAAATCCACATATAAACCCTAAACTCAAATAGAAT	BnaA03T0502100ZS	MATCHED_REF	intron_variant	1	-5.03	7.36	-5.03	7.17	0.999939	BnaA03T0502100ZS_27856738
A03	28209800	28209800	C	A	ATTTTCACAATATACAAAATTCTCTACATCTCTTTCCAAATTTAACAAAT	TCTCAACTTTTAAAATCATCAAACTCTATAGAAATCTAAGTCCCACTAAC	BnaA03T0506400ZS	MATCHED_REF	intron_variant	1	-2.88	15.93	-2.88	16.72	0.997738	BnaA03T0506400ZS_28209800
A03	28209804	28209804	C	G	TCACAATATACAAAATTCTCTACATCTCTTTCCAAATTTAACAAATCTCT	AACTTTTAAAATCATCAAACTCTATAGAAATCTAAGTCCCACTAACACCC	BnaA03T0506400ZS	MATCHED_REF	intron_variant	1	-2.88	14.52	-4.35	17.60	0.682721	BnaA03T0506400ZS_28209804
A04	158140	158140	A	G	ATCAACAATCTCCTCACCCCGCCATCTATCCACCGCTTCTCTCTTCCCTC	TCATCTTCTTCCTTTTCCTCTCTCTCTTCTTCTGCTTCCCTCTTCACCAC	BnaA04T0002600ZS	MATCHED_REF	synonymous_variant	1	-1.38	2.17	-1.38	2.57	0.995371	BnaA04T0002600ZS_158140
A04	158152	158152	C	A	CTCACCCCGCCATCTATCCACCGCTTCTCTCTTCCCTCATCATCTTCTTC	TTTTCCTCTCTCTCTTCTTCTGCTTCCCTCTTCACCACACACTCTCTGAA	BnaA04T0002600ZS	MATCHED_REF	synonymous_variant	1	-1.38	5.55	-1.38	5.61	0.999919	BnaA04T0002600ZS_158152
A04	2567695	2567695	U	C	GTCGTCGTTTCAGCTGCCGTCTTCCTCCTCATCTCCCTCGCCTATCTTCC	CTCCTCAACCAACTATGTAATAATTACTCCGTCGTTAAATCAAAACTCCT	BnaA04T0038700ZS	MATCHED_REF	synonymous_variant	1	-9.08	13.92	-9.08	14.07	0.999933	BnaA04T0038700ZS_2567695
A04	3255765	3255765	C	U	CACCTCTTCTCCCCAAACACACACAACTCCCTCACTCTCCGCCGCCTCTT	CTCTCCTCCGCCTCCAACGCCACCGTCTCCTCTTACCTCCACTCCTTAAC	BnaA04T0046300ZS	MATCHED_REF	synonymous_variant	1	-1.68	5.97	-1.68	5.96	0.999991	BnaA04T0046300ZS_3255765
A04	3255783	3255783	C	U	ACACACAACTCCCTCACTCTCCGCCGCCTCTTCCTCTCCTCCGCCTCCAA	GCCACCGTCTCCTCTTACCTCCACTCCTTAACCCGTCACCCTCACCTCGC	BnaA04T0046300ZS	MATCHED_REF	synonymous_variant	1	-1.68	7.66	-1.07	7.66	0.869362	BnaA04T0046300ZS_3255783
A04	4623119	4623119	C	U	ATGCGTTCCTTTAATCTATCTCTCTGTTTTGCCTTCCTTTAATCCATCTC	CTTCTGTCACCTCTTCTCTTCCATCTATTAAATACATCTTCCTCTTCTAA	BnaA04T0060400ZS	MATCHED_REF	intron_variant	1	-3.82	5.45	-3.82	6.66	0.999297	BnaA04T0060400ZS_4623119
A04	5043125	5043125	G	A	CTACCTTCAGCCTGCTACTCCAACTCCTTCATCTAACTCTTCGTTCTTCC	CCGTGTCTCTTCCTCTTTCCTCCGCATCCTATCCGCCTTATTCGATTCCA	BnaA04T0065100ZS	MATCHED_REF	missense_variant	1	-5.13	15.03	-3.46	13.80	0.723085	BnaA04T0065100ZS_5043125
A04	6007305	6007305	C	G	TCCATTCTAGCGACCTAACATTCCATTTCATCCTTACCATTTTTTTACGA	CCATTTATCTTTACTTAATCATTTCTACACATTTTCATTCACTTAACCAT	BnaA04T0073800ZS	MATCHED_REF	intron_variant	1	-2.01	6.17	-3.01	8.34	0.932518	BnaA04T0073800ZS_6007305
A04	6323199	6323199	C	U	TTTCTCCTCCTTCTCTTTATTCTTCTCCCCCTCCGCCTATTTCTCTTCCT	TTTCTTCTCCTCTGTTTCTGCTTCTTTTTTGTGTTCCTCTTCTGTTTTCT	BnaA04T0077000ZS	MATCHED_REF	intron_variant	1	-1.07	5.67	-1.07	5.59	0.999833	BnaA04T0077000ZS_6323199
A04	6323203	6323203	C	A	TCCTCCTTCTCTTTATTCTTCTCCCCCTCCGCCTATTTCTCTTCCTCTTT	TTCTCCTCTGTTTCTGCTTCTTTTTTGTGTTCCTCTTCTGTTTTCTCTTC	BnaA04T0077000ZS	MATCHED_REF	intron_variant	1	-1.07	6.31	-1.07	6.61	0.994214	BnaA04T0077000ZS_6323203
A04	6323244	6323244	U	C	TTCCTCTTTCTTCTCCTCTGTTTCTGCTTCTTTTTTGTGTTCCTCTTCTG	TTTCTCTTCATCTTCCTACTCTGCCACCTTTTCCTCCTCCTTCATCTCCG	BnaA04T0077000ZS	MATCHED_REF	intron_variant	1	-1.74	8.20	-2.73	6.74	0.819445	BnaA04T0077000ZS_6323244
A04	11489435	11489435	U	C	TTCCTCTGCAACTCAGTTTCTCTCTCATCATCTCTCTCTCTCCACTTCCC	CTCACATCTCTCCGTCTCACTACAACCACTAACTCCTCTTCTTCTTCTCT	BnaA04T0096200ZS	MATCHED_REF	synonymous_variant	1	-2.34	4.07	-2.34	4.07	1.000000	BnaA04T0096200ZS_11489435
A04	12035062	12035062	C	U	CCAACAACAACAACCTCCCCTCCTCCTCCGCCGCCATCAAACACACCTTC	CCCCCTAAACCATCTCCTTCTCCGCCTTCAGATACACGTTCTCCTCCACC	BnaA04T0101900ZS	MATCHED_REF	synonymous_variant	1	-2.15	6.92	-2.15	7.02	0.999797	BnaA04T0101900ZS_12035062
A04	13711263	13711263	U	A	CCATCTAAAATGACAAACAGATCTTCCAAAACCCACCTTACACTTTCAAA	TTTCTCCCTTTTACCCCAAACTTTATTATTTGTACTATTACGCTCATCAC	BnaA04T0120500ZS	MATCHED_REF	intron_variant	1	-4.76	15.29	-4.76	16.16	0.940866	BnaA04T0120500ZS_13711263
A04	18337556	18337556	G	A	CAACCTCCCACACCAACCTATAGTCCACCTATTAAACCACCTCCAGTAAA	CCTCCAACTCCAACTTACAGTCCTCCAGTCAAGCCACCTCCCGTTCAAAA	BnaA04T0178400ZS	MATCHED_REF	synonymous_variant	1	-4.40	13.62	-4.12	13.20	0.949027	BnaA04T0178400ZS_18337556
A04	18571419	18571419	C	A	TCTACTCACTCTCCTCTTCTTCTCCTCACTCCTCTCCCTATCCAAATCTA	CCCACTGAAACCACACCCTCTTCCGATCCTACCCCTCCCTTCATCCCAAC	BnaA04T0181700ZS	MATCHED_REF	missense_variant	1	-0.46	6.33	-0.46	6.37	0.999967	BnaA04T0181700ZS_18571419
A04	18818145	18818145	C	G	AATCTTCATTCTTCGACTCTCCGCAAATCTCTTCTCATTTCCCACCGTTA	TAATCCCCTCTCCTCTCTCTTCCCTCCCTCTCTTCGTGTCTCTCAAACCC	BnaA04T0184300ZS.2	MATCHED_REF	5_prime_UTR_variant	1	-2.87	9.85	-3.72	13.29	0.895489	BnaA04T0184300ZS.2_18818145
A04	19764933	19764933	C	A	ATCGTCTCCTCTCCTCCGAATCTCTCACCATCAACAAACCCTCTATTTAT	TTCCTCCAAATCACCAACCGCCTCCTCCTCTCTCCGTCTTCTTCTTCATC	BnaA04T0197600ZS	MATCHED_REF	5_prime_UTR_variant	1	-1.05	4.92	-1.05	5.97	0.959613	BnaA04T0197600ZS_19764933
A04	19764935	19764935	U	C	CGTCTCCTCTCCTCCGAATCTCTCACCATCAACAAACCCTCTATTTATCT	CCTCCAAATCACCAACCGCCTCCTCCTCTCTCCGTCTTCTTCTTCATCAC	BnaA04T0197600ZS	MATCHED_REF	5_prime_UTR_variant	1	-0.29	4.93	-0.29	4.90	0.999912	BnaA04T0197600ZS_19764935
A05	1225256	1225256	C	A	TTTTTCTTTCTCCTCTTTACTATCGATCTCATCTCTTAAAAAAAAAAAAT	TAAATCACCATTGTCTCAAATTAATTACACCACCAAACATTTTCGTTGAA	BnaA05T0019500ZS	MATCHED_REF	intron_variant	1	-3.99	18.29	-3.99	18.99	0.997957	BnaA05T0019500ZS_1225256
A05	2228102	2228102	U	C	CCACCTCCTCCTCCGCCATCTCCGCCCCATCCAAACACATTCTTCCCATC	TCCGACCCATCCTCACCCACCTCTCACCCCCCACCATCCCCATCTCCTCC	BnaA05T0040700ZS	MATCHED_REF	synonymous_variant	1	-1.41	2.22	-1.41	2.08	0.996701	BnaA05T0040700ZS_2228102
A05	2734443	2734443	C	U	CGCCTCTTCCTCCACTTCCACCGCCGCTACTTCCTCCTCCTCCTTCCCTC	TCCTCAGAACCCTAACTTCCACCACCACCACCCTTCCTCCGCCGATCATT	BnaA05T0050300ZS	MATCHED_REF	missense_variant	1	-0.77	6.82	-1.20	7.27	0.951690	BnaA05T0050300ZS_2734443
A05	7893125	7893125	U	C	ACTATATTTCACAAATAACAATATCAATCCTTCTCTCCTATTTTCTCTTC	TATCTCTCTCTACTCTCTTACTACAAATCTAATATTTTCCCCAATATATT	BnaA05T0130400ZS	MATCHED_REF	intron_variant	1	-3.59	8.56	-3.59	8.41	0.999862	BnaA05T0130400ZS_7893125
A05	7893149	7893149	C	U	CAATCCTTCTCTCCTATTTTCTCTTCTTATCTCTCTCTACTCTCTTACTA	AAATCTAATATTTTCCCCAATATATTCATTCATCAAATTAACCCTAAAAT	BnaA05T0130400ZS	MATCHED_REF	intron_variant	1	-2.62	6.83	-2.62	7.72	0.997016	BnaA05T0130400ZS_7893149
A05	7893154	7893154	C	U	CTTCTCTCCTATTTTCTCTTCTTATCTCTCTCTACTCTCTTACTACAAAT	TAATATTTTCCCCAATATATTCATTCATCAAATTAACCCTAAAATATAAT	BnaA05T0130400ZS	MATCHED_REF	intron_variant	1	-2.62	11.81	-2.62	13.38	0.988861	BnaA05T0130400ZS_7893154
A05	7893703	7893703	A	C	TAAATAAAATTTAGAAAATTAAATAAAAAATAACTAAAAATTCAAAAATA	ATAAGATCAAATTAAAATAGAGAAAAAAATAATAATAAATTTCAAAAAAT	BnaA05T0130400ZS	MATCHED_REF	intron_variant	1	-5.64	15.25	-5.64	14.75	0.991967	BnaA05T0130400ZS_7893703
A05	8104610	8104610	A	G	TTAATTGCAAATATCAATACCCTAAACCTTTAACCATATACTCAACCTCT	TTCTAAACTCATAACTTTAAATTTAAACTCTAAATAAAAAAATAATTAAA	BnaA05T0133500ZS	MATCHED_REF	intron_variant	1	-3.21	15.57	-3.69	17.77	0.870624	BnaA05T0133500ZS_8104610
A05	9529558	9529558	G	A	ATAGGTGAGAGAGAGAGGGAGGGAGAGAGAGGGAGGGAGAGGGAGGGACG	AGAGAGAGAGAGGGAGGGAGAGGGAGGGAGGGAGGAGGGAGGAGGAGAGG	BnaA05T0150000ZS	MATCHED_REF	intron_variant	1	-0.99	1.18	-0.99	1.15	0.999933	BnaA05T0150000ZS_9529558
A05	9529589	9529589	G	U	GGAGGGAGAGGGAGGGACGGAGAGAGAGAGAGGGAGGGAGAGGGAGGGAG	GAGGAGGGAGGAGGAGAGGGGAGAGAGAGTGGGAGAGAGGGAGAGAGAGG	BnaA05T0150000ZS	MATCHED_REF	intron_variant	1	-0.99	1.12	-0.99	1.43	0.989160	BnaA05T0150000ZS_9529589
A05	34197252	34197252	C	U	ACCGCCCACAAAACCACCCACCGTTAAACCACCTCCATCCACCCCTAAGC	GCCCACCAAACCACCCACCGTCAAACCACCACCCTCCACCCCAAAACCGC	BnaA05T0338800ZS	MATCHED_REF	missense_variant	1	-1.44	5.32	-1.44	7.13	0.974616	BnaA05T0338800ZS_34197252
A05	38586035	38586035	A	G	AGGCGGAGGAGAGGAAGAAGATGAGGGAGTTGGAGAGGGAGATGGAAGGG	TTGAGTTGGATGATGAGGAGGAGGAGGAAGGAGGAGGAGGGAGTGGGGAG	BnaA05T0392300ZS	MATCHED_REF	missense_variant	1	-6.82	5.92	-6.03	8.13	0.987152	BnaA05T0392300ZS_38586035
A05	40612485	40612485	C	U	AATTTTACTCCAATTTATATATATTATTTTAAAAATCAAACCATTTTCAA	CGTTCCATTTACACATACTAAAAGACCGCCATGATCCTCATTAATATTTT	BnaA05T0428100ZS	MATCHED_REF	intron_variant	1	-6.82	17.33	-6.71	21.42	0.971460	BnaA05T0428100ZS_40612485
A05	41141695	41141695	A	C	TCAAACAATCATAGCTAAATCCAATCTTATTTCTTATAATCTCTACTTAC	CTCTCATTCCCTGCAGTACAATCCACCATTCACTCTCCCGTTCACCCGCC	BnaA05T0437500ZS	MATCHED_REF	missense_variant	1	-2.53	14.34	-1.81	15.24	0.833560	BnaA05T0437500ZS_41141695
A06	8415942	8415942	G	U	ATGGAGAAAGAGAAAGAAGAAGAAGAGGCAAAGAAGAAGAAGAAGACAGT	AAAGAAGAAGGAGAAGTGAAGAAGAAGAAGGAGAAGAAAGTGTATGATTT	BnaA06T0140900ZS	MATCHED_REF	synonymous_variant	1	-3.48	3.04	-3.54	4.28	0.925036	BnaA06T0140900ZS_8415942
A06	11367693	11367693	U	A	ACTACCTAACTTTACCACACACAATCCTTTTCTTAATTCAACATCACTTC	ATTAATTACAAACATCATTGCCAACTCACCAAAACATTAACTACCTAACT	BnaA06T0178300ZS	MATCHED_REF	intron_variant	1	-2.43	10.05	-3.32	9.31	0.810616	BnaA06T0178300ZS_11367693
A06	38956547	38956547	A	U	TTATCAATTTTGACAATTTCTTAATTTTACTTTTATTTTTTTAATTTTTA	TTTTATTTTACTTTCTGTTTTTTTATTCTTATTTTTACTTATTTTTCGTA	BnaA06T0294600ZS	MATCHED_REF	intron_variant	1	-6.03	14.92	-3.44	19.92	0.639625	BnaA06T0294600ZS_38956547
A06	39061926	39061926	U	A	AACTTAATCCTCATCATCATCGCCGTTTCCGCCATCCTCCTCCTCCTCCT	ACCCTCATCATCTACTCCACCGTCTCCAAATCCTCCCACAACGCACCGCA	BnaA06T0296300ZS	MATCHED_REF	synonymous_variant	1	-3.21	7.76	-3.21	7.79	0.999975	BnaA06T0296300ZS_39061926
A06	39061945	39061945	A	U	TCGCCGTTTCCGCCATCCTCCTCCTCCTCCTTACCCTCATCATCTACTCC	CCGTCTCCAAATCCTCCCACAACGCACCGCAAAAACCCCCTTCCTCCGCC	BnaA06T0296300ZS	MATCHED_REF	missense_variant	1	-3.21	9.45	-3.21	9.45	0.999995	BnaA06T0296300ZS_39061945
A06	41514342	41514342	U	C	AAATCCTCGACCACTTTCTCACCAATCTCCTGCACCAACTCTTCTCTATG	CCTCTCCTCTCTCCTAATTCCACTAGCTATGATAACACAACAACAACAAG	BnaA06T0331900ZS	MATCHED_REF	synonymous_variant	1	-4.03	10.92	-4.03	7.14	0.904825	BnaA06T0331900ZS_41514342
A07	3146137	3146137	A	G	GCCACCACCACCACCACCTTCTCCTCTTCACTCTCTCTAATCCCCAAACC	AACAACCCTTGTACCACTAAACCCCTCTCTCTCCTCCCAAAACCCTTCCT	BnaA07T0036400ZS	MATCHED_REF	synonymous_variant	1	-1.91	1.22	-2.11	2.81	0.927089	BnaA07T0036400ZS_3146137
A07	3146148	3146148	G	C	CACCACCTTCTCCTCTTCACTCTCTCTAATCCCCAAACCAAACAACCCTT	TACCACTAAACCCCTCTCTCTCCTCCCAAAACCCTTCCTTAAACCTTCCC	BnaA07T0036400ZS	MATCHED_REF	missense_variant	1	-1.91	1.14	0.00	0.09	0.188364	BnaA07T0036400ZS_3146148
A07	3146152	3146152	C	U	ACCTTCTCCTCTTCACTCTCTCTAATCCCCAAACCAAACAACCCTTGTAC	ACTAAACCCCTCTCTCTCCTCCCAAAACCCTTCCTTAAACCTTCCCCTCT	BnaA07T0036400ZS	MATCHED_REF	synonymous_variant	1	-1.91	1.14	-1.91	1.14	1.000000	BnaA07T0036400ZS_3146152
A07	3146167	3146167	U	G	CTCTCTCTAATCCCCAAACCAAACAACCCTTGTACCACTAAACCCCTCTC	CTCCTCCCAAAACCCTTCCTTAAACCTTCCCCTCTCTCCCTCAGCTCCTC	BnaA07T0036400ZS	MATCHED_REF	synonymous_variant	1	-1.91	1.61	-3.34	1.61	0.754085	BnaA07T0036400ZS_3146167
A07	3146188	3146188	U	A	AACAACCCTTGTACCACTAAACCCCTCTCTCTCCTCCCAAAACCCTTCCT	AAACCTTCCCCTCTCTCCCTCAGCTCCTCTTCTCCTCCTCTCCTCGTCCA	BnaA07T0036400ZS	MATCHED_REF	synonymous_variant	1	-1.91	2.15	-1.91	2.13	0.999988	BnaA07T0036400ZS_3146188
A07	3555243	3555243	U	G	CATAACTATTCTCCTTTCCTTCTCTCAAATTATACTCTTTAATATTTCTC	TTTGCTCTTTTTATTTTCTAATCAAAATCACCATAATACGTTCCTTCATA	BnaA07T0039700ZS	MATCHED_REF	intron_variant	1	-2.83	18.45	-4.55	17.31	0.879623	BnaA07T0039700ZS_3555243
A07	16181658	16181658	C	G	TTCTCAAAAATTTACCGTTAAAATTTCAAAAAAAAAAAAAAAAAATTCAA	TCAATAAATAAAAATATTTTCATATCAACAAAAATCAATCATGCAATAAA	BnaA07T0119600ZS	MATCHED_REF	intron_variant	1	-3.40	15.65	-4.57	12.70	0.940940	BnaA07T0119600ZS_16181658
A07	19176326	19176326	C	U	TCGTTCCTCTGCAAATCTCATCCATATCCCTCCCTTCCTTCCAAAGCCGT	AGTATCCTCTCTCTCATTTCTATCCATCGATTTCGTCTCAAAAGCCACCT	BnaA07T0163000ZS	MATCHED_REF	splice_donor_region_variant,intron_variant	1	-4.75	18.38	-5.18	18.40	0.987333	BnaA07T0163000ZS_19176326
A07	21935936	21935936	C	U	ACTCACCAACAATCTCACCCAACTTCTTTTTTAACCCTCTCATTAAATCC	ACTAATCTTCAAACCCTATCTCTCATTTCACTCCTTACATCCATCCTATG	BnaA07T0207200ZS	MATCHED_REF	5_prime_UTR_variant	1	-1.39	4.85	-1.39	4.85	1.000000	BnaA07T0207200ZS_21935936
A07	23837954	23837954	G	C	CGTCTCCTCCTTGTCCTCATAATCCCTTCTGTATCCCTCCTCTTCTTACT	TCTCTATCTACCCTCACTCTTGATCCTCTTCCTTCTCTCGCCCCTCTTCG	BnaA07T0244100ZS	MATCHED_REF	synonymous_variant	1	-4.69	8.95	-4.69	5.68	0.948778	BnaA07T0244100ZS_23837954
A07	26154483	26154483	C	U	CTCTCATCTTCTCTCCCACTCGCTCTCCTCCACTCCATACTCCACCACAC	CAATCCTTCCAGAATCCATCGCATCATCCTCCTTCTCCCTCTAACTCGCC	BnaA07T0281100ZS	MATCHED_REF	synonymous_variant	1	-0.56	5.30	-0.56	5.33	0.999528	BnaA07T0281100ZS_26154483
A07	27661756	27661756	C	A	AACCCAAACTCTAAACCCTAAACTATAAACCCTAGATCTTAAATCCTAAA	CCAAACATTAGACCCTAAATTTAACCTTAAACCCTAAACCCAATTCTATA	BnaA07T0307400ZS	MATCHED_REF	intron_variant	1	-4.09	15.38	-4.09	15.39	0.999999	BnaA07T0307400ZS_27661756
A08	1501308	1501308	A	C	AATTACTTAACCCTTACATTAACTTCATCTTCTAAAGACTTAACCCTAAA	CTAATAAATAAATCAAAATCCAAATACAAAATGATAAAAACAAATTCTCT	BnaA08T0017800ZS	MATCHED_REF	intron_variant	1	-3.54	9.05	-3.54	9.02	0.999921	BnaA08T0017800ZS_1501308
A08	16257543	16257543	G	U	TCCTCTTGATCAGTTTCCGCTTCTTCCTTGTCTTCGTCTTCTCCATTCTC	CCTTCTCCTTCTTCCTTTCCATCTCTCTCAAACTCGCTCTTCCTCACCTT	BnaA08T0102900ZS	MATCHED_REF	missense_variant	1	-3.91	9.31	-3.59	8.32	0.967029	BnaA08T0102900ZS_16257543
A08	16257555	16257555	U	A	GTTTCCGCTTCTTCCTTGTCTTCGTCTTCTCCATTCTCGCCTTCTCCTTC	TCCTTTCCATCTCTCTCAAACTCGCTCTTCCTCACCTTCCTTCGATTCGC	BnaA08T0102900ZS	MATCHED_REF	missense_variant	1	-1.78	10.24	-1.78	10.30	0.999947	BnaA08T0102900ZS_16257555
A08	16257560	16257560	U	C	CGCTTCTTCCTTGTCTTCGTCTTCTCCATTCTCGCCTTCTCCTTCTTCCT	TCCATCTCTCTCAAACTCGCTCTTCCTCACCTTCCTTCGATTCGCCTGAT	BnaA08T0102900ZS	MATCHED_REF	synonymous_variant	1	-3.70	10.82	-3.70	10.82	0.999999	BnaA08T0102900ZS_16257560
A08	17088950	17088950	C	A	ATGTACTCTGTTTCTTCCTCTTCCTTCATCTCTACATTCTCTCCTAAACC	TCTCTTCATCTTCGCCACTCATCTTCCTCTCGTCTTCTTCCCCGTATCAA	BnaA08T0113600ZS	MATCHED_REF	synonymous_variant	1	-2.64	3.27	-2.64	3.36	0.999955	BnaA08T0113600ZS_17088950
A08	18982129	18982129	G	A	ACATTGCCACAACCAACTCTTCCAACCATTCCCACTTCAATTCCTCCATT	CCATCAACATTTCCAAAACCAACTCTTCCCACCATTCCCACTTCAATTCC	BnaA08T0140500ZS	MATCHED_REF	synonymous_variant	1	-2.10	3.50	0.00	4.15	0.601126	BnaA08T0140500ZS_18982129
A08	18982152	18982152	C	U	AACCATTCCCACTTCAATTCCTCCATTGCCATCAACATTTCCAAAACCAA	TCTTCCCACCATTCCCACTTCAATTCCTCCATTGCCATCAACATTACCAC	BnaA08T0140500ZS	MATCHED_REF	missense_variant	1	-4.20	1.75	-4.20	2.14	0.999830	BnaA08T0140500ZS_18982152
A08	21290994	21290994	C	G	TTTGTTAACTATTCATAAATTTTCTTACTCTGCAGCCCTACATCACCATC	TACTCACCCACATCTCCATCGTATTCACCTTCAAGTCCAACATACAGTCC	BnaA08T0177400ZS	MATCHED_REF	synonymous_variant	1	-3.08	19.32	-4.18	23.14	0.826685	BnaA08T0177400ZS_21290994
A08	22266018	22266018	A	C	CTACCAAACTACTTCAACAACAACACGTTCTTACCCATAAACCAACAACC	GACCCGACATCTCAACCCGACCTCCGTACCTTCTCCGCCACATCATCATT	BnaA08T0194000ZS	MATCHED_REF	synonymous_variant	1	-3.27	12.15	-3.27	10.90	0.984029	BnaA08T0194000ZS_22266018
A09	4783753	4783753	G	A	CACCCATCTAAACACACTATATTTAATTATCTCACTCCTCTCATATTAAA	TAATCATCACCTCACTTTTATCTCTCTCTCTCTGTTTTATTCTTCTTCTT	BnaA09T0080300ZS	MATCHED_REF	intron_variant	1	-3.02	13.27	-2.52	13.29	0.701721	BnaA09T0080300ZS_4783753
A09	6614104	6614104	C	A	AACCCTTTCAAATCCCCAAACCTCTCCTCCGCCAAATCCCTCTTCAACTC	ATCGCCGCCACCTCCAAAACCCCCCTCGACACCAAATTCCACAACTCCGT	BnaA09T0113100ZS	MATCHED_REF	synonymous_variant	1	-0.08	5.45	-0.08	5.46	0.999992	BnaA09T0113100ZS_6614104
A09	6821247	6821247	U	C	TCAATCGTCGTCTCCTTCTCACCAAGATCAATCCAAACCCATACTCCCTC	CTCTCAAATCCACACACCACCTCTGTTTCCCCTCCCCCAATGCCGTTCTC	BnaA09T0116000ZS	MATCHED_REF	missense_variant	1	-2.13	12.70	-2.13	12.66	0.999976	BnaA09T0116000ZS_6821247
A09	7325968	7325968	U	C	TACTTTATTTTACTCCACTTTATTTTTCTCTCTCTCGTATTTTACTATTA	ATCATCTTCGTTTTACCACTTTTTTACTCCATTTTACTTTTAACTTTTAA	BnaA09T0121900ZS	MATCHED_REF	intron_variant	1	-1.62	8.20	-1.85	7.28	0.843814	BnaA09T0121900ZS_7325968
A09	7325969	7325969	A	U	ACTTTATTTTACTCCACTTTATTTTTCTCTCTCTCGTATTTTACTATTAT	TCATCTTCGTTTTACCACTTTTTTACTCCATTTTACTTTTAACTTTTAAG	BnaA09T0121900ZS	MATCHED_REF	intron_variant	1	-1.62	10.26	-1.62	9.34	0.972614	BnaA09T0121900ZS_7325969
A09	7947469	7947469	A	G	AAGAAAACAATTAAAAAAATATATCAGAAAGAAAAATTAATAGACACAAA	AAAAAACTATAATTAACATAATAGAAAATAACCAGAAGAAAATTACCAAT	BnaA09T0132000ZS	MATCHED_REF	intron_variant	1	-4.02	9.83	-4.02	10.06	0.999967	BnaA09T0132000ZS_7947469
A09	13447029	13447029	C	U	TCAATAAAATAGCAAAACAACACTCCATAGTTTAATAAATCCGAAAACAA	AATTCATAGTTCAATAAAACCGAAAAAAACATTCCTTAGTTCAATCCCAA	BnaA09T0197700ZS	MATCHED_REF	intron_variant	1	-7.49	13.23	-7.49	12.89	0.999027	BnaA09T0197700ZS_13447029
A09	13913963	13913963	C	U	TTCAACACTCTCTCTATATTCAAAATCTTCTTTTTTATATTTTTAACATT	CACATCATCTTATCTCTCTTCCACCTCATTTATTCAACATCCACTTCATT	BnaA09T0201700ZS	MATCHED_REF	intron_variant	1	-3.00	3.96	-3.00	3.97	0.999988	BnaA09T0201700ZS_13913963
A09	13914004	13914004	C	U	TTTAACATTCCACATCATCTTATCTCTCTTCCACCTCATTTATTCAACAT	CACTTCATTCTAAACCTATATAATAATTTGTTTTAAAAAATTTAACACCC	BnaA09T0201700ZS	MATCHED_REF	intron_variant	1	-2.90	13.59	-2.90	13.78	0.999752	BnaA09T0201700ZS_13914004
A09	14162410	14162410	C	G	TCACTCTCCCTCCCCTCAAAAACCCTAAAACCTCTCTCCACCTCACTCCT	TCCCTCTCCTTCCTCAACTGCCCTTCTCTCTCTCCTCCAAAACACCTCCC	BnaA09T0204300ZS	MATCHED_REF	synonymous_variant	1	0.00	0.43	-0.86	1.63	0.170016	BnaA09T0204300ZS_14162410
A09	50815604	50815604	U	C	CTTCTCTTCATCAACCAATTCTCTTCTTCTTCTTAGCAACCCTTCTCCCA	TAATCCTGACCGTCCATTCTCAACCCTCTCCATCACCATCACCATCACCA	BnaA09T0454800ZS	MATCHED_REF	synonymous_variant	1	-0.24	6.85	-1.51	6.51	0.621397	BnaA09T0454800ZS_50815604
A09	54168480	54168480	C	U	AACTCCCACCAAACTTCCAATTTTTAAAACTCGCATCCCATTCACTTCTA	CAGATTTCGTTTATTACTCTCGTCACACTCTCTCTCCGTCTCCCATCTCC	BnaA09T0504600ZS	MATCHED_REF	splice_region_variant,splice_polypyrimidine_tract_variant,intron_variant	1	-2.47	11.17	-4.05	5.79	0.845388	BnaA09T0504600ZS_54168480
A09	55311879	55311879	A	C	AGACACTTTTATTTCTCTGAATCTTCTCTCTTCTTCTCTCCTATAACCAA	GCTGCTTACTTTATCTCTCTATCTCTCTTTATCTCTCTCTCTCCTTCACG	BnaA09T0520500ZS	MATCHED_REF	intron_variant	1	-4.40	14.82	-2.25	12.84	0.694969	BnaA09T0520500ZS_55311879
A09	56391081	56391081	G	U	CAGTCAAATCTCCACCACCACCGTACCATTACAACTCTCCCCCTCCTCCC	TAAAATCTCCTCCTCCAGTCTACATCTACGCATCTCCACCACCTCCCATC	BnaA09T0540400ZS	MATCHED_REF	missense_variant	1	-3.50	9.90	-2.39	8.12	0.768759	BnaA09T0540400ZS_56391081
A09	56391083	56391083	A	G	GTCAAATCTCCACCACCACCGTACCATTACAACTCTCCCCCTCCTCCCGT	AAATCTCCTCCTCCAGTCTACATCTACGCATCTCCACCACCTCCCATCCA	BnaA09T0540400ZS	MATCHED_REF	synonymous_variant	1	-2.72	9.56	-3.57	11.23	0.936334	BnaA09T0540400ZS_56391083
A09	60011018	60011018	A	C	CAATCACAACCTATACAGACAACCTTTCAATAACTCTATACACACGAACT	TACAACCAAACATTCAGAAACAAACAAATCAATTCGAACAAACCAAGCCA	BnaA09T0608200ZS	MATCHED_REF	intron_variant	1	-2.49	11.95	-2.49	12.24	0.989007	BnaA09T0608200ZS_60011018
A09	60994358	60994358	C	U	CACCACCACCTCTACTCCTCTTCATCCTCACCGTCACCACTCTCCTCCCT	CCTCGTCCTCCCTTGATTTCCTCTACAACAACTTCACCTCCGCAGCAAAC	BnaA09T0626400ZS	MATCHED_REF	missense_variant	1	-2.27	7.82	-2.27	8.09	0.999808	BnaA09T0626400ZS_60994358
A10	1563275	1563275	C	U	AAACTGATTAAATTACTTCAAAATCTAAACACTTTATCTAATAACCTTAC	CCTTAAATATAAAATCTTAAACCAATCAATAAAATAAAAATCAAATTAAA	BnaA10T0027800ZS	MATCHED_REF	intron_variant	1	-3.39	12.82	-3.39	12.91	0.999989	BnaA10T0027800ZS_1563275
A10	3393258	3393258	C	U	CAAGCCTTAAATCTCCAATCAAACTCTAACAATATAATCCAATCCCTAAA	CACATACTTTAACATATATCATAAGAACATTAAACCTCAAACTTTAAATA	BnaA10T0054700ZS	MATCHED_REF	intron_variant	1	-3.15	6.28	-3.15	6.54	0.999676	BnaA10T0054700ZS_3393258
A10	3393268	3393268	U	G	ATCTCCAATCAAACTCTAACAATATAATCCAATCCCTAAACCACATACTT	AACATATATCATAAGAACATTAAACCTCAAACTTTAAATAAAATATAATT	BnaA10T0054700ZS	MATCHED_REF	intron_variant	1	-3.15	6.52	-3.51	8.66	0.957225	BnaA10T0054700ZS_3393268
A10	16573994	16573994	G	U	GAGGAGACAAAGGACGAGAAGGAAGATGAAAAAGAAGAGAGCAATGATGA	AAAGAAGATGAAAAAGAAAAGAACAATGATGATAAGGAAGATGAAAATGA	BnaA10T0117600ZS	MATCHED_REF	missense_variant	1	-1.52	10.48	-2.28	8.92	0.931777	BnaA10T0117600ZS_16573994
A10	16573997	16573997	A	G	GAGACAAAGGACGAGAAGGAAGATGAAAAAGAAGAGAGCAATGATGAGAA	GAAGATGAAAAAGAAAAGAACAATGATGATAAGGAAGATGAAAATGAAGA	BnaA10T0117600ZS	MATCHED_REF	synonymous_variant	1	-1.52	10.20	-2.48	7.23	0.931635	BnaA10T0117600ZS_16573997
A10	21264817	21264817	C	U	CAACCTGAACAACACAACTTCAAACCCATCAACCCTCCAACCTACGACAT	TCATCACCAATCCAACCTCATCACTTCAACTCTAGTTACCAATCAATCTT	BnaA10T0189000ZS	MATCHED_REF	synonymous_variant	1	-2.37	6.56	-2.37	7.22	0.996401	BnaA10T0189000ZS_21264817
A10	23136180	23136180	A	G	GATGAGGATGAAGAGGAAGATGACGAGGGTAATAATGACAAGGAAGAGGA	AACAAAGAGGTTGGGGATAAGGAAGAAGTGAGTGAAGGCGGTAATAAACA	BnaA10T0228000ZS	MATCHED_REF	synonymous_variant	1	-7.18	15.96	-7.22	14.45	0.967959	BnaA10T0228000ZS_23136180
A10	24275860	24275860	U	C	TCCTCTCTGTCTTTCCTTTTCATCTTCTTTCTCTCTCTCTCTATCTGAAC	TCCTTCCTCTCTTCTCACCGCTTTTCTCATCTCCACCGATTTATTTATTT	BnaA10T0252300ZS	MATCHED_REF	5_prime_UTR_variant	1	-3.05	5.39	-3.05	5.25	0.999587	BnaA10T0252300ZS_24275860
A10	24339576	24339576	A	G	TACCATCGATTCTCCAGACAACACCAACTCCACAGACCATTCACCACGAA	CCAGACAACAACACATTCCTCCATCCCAACCAATCCGAACTCGCCCAAAA	BnaA10T0254100ZS	MATCHED_REF	synonymous_variant	1	-3.24	10.05	-3.46	12.77	0.976515	BnaA10T0254100ZS_24339576
A10	24339591	24339591	A	U	AGACAACACCAACTCCACAGACCATTCACCACGAAACCAGACAACAACAC	TTCCTCCATCCCAACCAATCCGAACTCGCCCAAAACCTAATCACAATCTT	BnaA10T0254100ZS	MATCHED_REF	synonymous_variant	1	-1.55	8.63	-1.55	9.26	0.982053	BnaA10T0254100ZS_24339591
A10	24339633	24339633	C	U	AACAACACATTCCTCCATCCCAACCAATCCGAACTCGCCCAAAACCTAAT	ACAATCTTCACAAGACAACCTTTCTCCCCCTCCGACCCCGACCTGCTCCG	BnaA10T0254100ZS	MATCHED_REF	synonymous_variant	1	-3.40	9.01	-3.40	8.94	0.999963	BnaA10T0254100ZS_24339633
C01	2743546	2743546	A	U	GCACCAATCTCATCGCCTTCATCTCTCGCTCTCCTCTCAACCAAAACTCG	TCTCCACTCTCCCTCATCCTCCTCACTCCCAAATCCCTAATCTTCTCCAC	BnaC01T0048600ZS	MATCHED_REF	synonymous_variant	1	-1.82	6.30	-2.14	3.61	0.597111	BnaC01T0048600ZS_2743546
C01	7301771	7301771	U	C	CTCAGTTACAAAAAAAATATATATTCTCTCTCACTCTTCTTTCACATCTT	CCCTTATCCTCCTCTCCCTTTCATTCCCTTCACCTATTAAGCCTCTCATT	BnaC01T0108700ZS	MATCHED_REF	intron_variant	1	-0.61	6.25	-0.61	6.19	0.999955	BnaC01T0108700ZS_7301771
C01	10245234	10245234	U	C	TAATTAATAAAAACACTAAATTACACTAAATTTTAAACATTGACCTTACC	ATATTCCATAAATACTAAATCGTAAATTCTAAACCTAAATAAAATAAAAA	BnaC01T0145200ZS	MATCHED_REF	intron_variant	1	-4.46	19.00	-4.46	18.45	0.938715	BnaC01T0145200ZS_10245234
C01	10824959	10824959	C	A	TCTTAACCCTAAATAATATTTTAAACTACACATAAAACTTAATCTTAATA	CCTAAAACGAAAACTCAAACCCTGCATACACGACCATACATTCATCTTTT	BnaC01T0154700ZS	MATCHED_REF	intron_variant	1	-1.63	11.15	-1.63	11.24	0.999948	BnaC01T0154700ZS_10824959
C01	19181452	19181452	U	G	TCAACACTAAACCCTAAACCCTAAAAAATTAACCCTAAACCCTAAAAAAT	AACCCTAAACCCTAAAACATCAACTCTAAACCCTAAACTTTCAACTCTAA	BnaC01T0247900ZS	MATCHED_REF	intron_variant	1	0.00	1.79	-0.12	3.94	0.541868	BnaC01T0247900ZS_19181452
C01	21722370	21722370	G	A	ACTCCAACCAAAGTTCCATCTCCACCGCCACCTACACTATCTCCTCCTCC	ACTCCAACGAAAGCTTCATCTCCACCACTGCCAAAACCATCTCTTCCTCC	BnaC01T0266100ZS	MATCHED_REF	synonymous_variant	1	-3.73	7.23	-3.05	6.92	0.908994	BnaC01T0266100ZS_21722370
C01	23414702	23414702	A	G	TCACTAAAAAATCTCCAAAAGACACCAAAATCACCACTTTCCTCCAAATC	TCCCTGAACTTGTAAACACTCTAAATAAACTCTATATCGTAGTAAATATA	BnaC01T0279000ZS	MATCHED_REF	intron_variant	1	-4.92	16.23	-5.76	19.58	0.854352	BnaC01T0279000ZS_23414702
C01	24331288	24331288	C	G	ATTCTAAACCTCACACACAAAATCCTAAATCTACGCCCTATATCTAATAC	CTAAACCCCAAACTTAAACCCTACTTACAAAATCATAAATCTAATCTTTT	BnaC01T0284200ZS	MATCHED_REF	intron_variant	1	0.00	1.98	-1.30	3.87	0.325126	BnaC01T0284200ZS_24331288
C01	24331656	24331656	C	A	TCTTAACCCTAAATACTATTTTAAACTACACATAAAACTTAATCTTAATA	CCTAAAACGAAAACTCAAACCCTGCATACACGACCATAAATTCATCTTTT	BnaC01T0284200ZS	MATCHED_REF	intron_variant	1	-1.63	9.12	-1.63	9.23	0.999950	BnaC01T0284200ZS_24331656
C01	46358051	46358051	C	U	CACTCTCCTCCACCACCAATCCACTCTCCGCCGCCACCACCAATTTTCTC	CCACCACCACCTACACCAATCTACTCTCCACCACCACCACCAGTTCATTC	BnaC01T0399300ZS	MATCHED_REF	synonymous_variant	1	-0.71	3.68	-0.71	3.68	1.000000	BnaC01T0399300ZS_46358051
C01	54318464	54318464	C	U	CGATCCAAGACTTCTGTATACCAAAACCAATCACATCTCCTCATCACCAT	CCTTCTCCACAAATCTCCCATGCAAAAACTCCTCCGAACTAACCACCGAA	BnaC01T0479300ZS	MATCHED_REF	missense_variant	1	-2.62	14.51	-2.62	15.10	0.991398	BnaC01T0479300ZS_54318464
C01	55897754	55897754	U	C	ATCTTTAATCTTAACACTCATCACCTTCATCTCTCTCTCCTCACTTTCCT	CTCTTTGCCGACGACAAATACAATCCCATCTTCTCCAACAATCTTTCCTT	BnaC01T0486500ZS	MATCHED_REF	missense_variant	1	-2.96	6.46	-2.96	7.39	0.977552	BnaC01T0486500ZS_55897754
C02	493227	493227	U	C	CTCCTTTCTCTATCCCTTCCCCAAAAAACCCTCCTCATCGCCACTCACCT	CTTTCTCTTCTCCAGCCTCTTCTACTCCACCGCAACCACCACACTCTCCC	BnaC02T0006600ZS	MATCHED_REF	synonymous_variant	1	-1.13	2.06	-1.13	2.06	1.000000	BnaC02T0006600ZS_493227
C02	493242	493242	G	C	CTTCCCCAAAAAACCCTCCTCATCGCCACTCACCTTCTTTCTCTTCTCCA	CCTCTTCTACTCCACCGCAACCACCACACTCTCCCCTCATATGCCGCCAA	BnaC02T0006600ZS	MATCHED_REF	missense_variant	1	-2.50	3.44	-2.50	1.26	0.936375	BnaC02T0006600ZS_493242
C02	3594165	3594165	A	G	AAACCTTAAAACTTTAAACTTTTCACACAATAAACATTAATCTAAACCCT	CCCTAAATACCATTTCTTAAAACCCTATATCGTAAATACAAACTCCAATT	BnaC02T0057500ZS	MATCHED_REF	intron_variant	1	-0.50	11.19	-0.50	11.77	0.972649	BnaC02T0057500ZS_3594165
C02	7189206	7189206	U	C	TCAGTTACAAAAAAAAATATATATTCTCTCTCACTCTTCTTTCACATCTT	CCCTTATCCTCCTCTCCCTTTCATTCCCTTCACCTATTAAGCCTCTCATT	BnaC02T0109700ZS	MATCHED_REF	intron_variant	1	-0.61	5.31	-0.61	5.24	0.999935	BnaC02T0109700ZS_7189206
C02	18909996	18909996	C	A	ACCCCAAACCCCAACCCCCAAACCCGAAACCCCAAACCCGAAACCCCAAA	CCGAAACCCAAAACCCCAAACCCGAAACCCGAAACCCAAAACCCAAAACC	BnaC02T0215500ZS	MATCHED_REF	intron_variant	1	-1.02	3.63	-1.02	3.63	0.999999	BnaC02T0215500ZS_18909996
C02	18910738	18910738	C	U	ACCCGAAACCCGAAACCCAAAACCCCAAACCCGAAACCCCAAACCCGAAA	CCGAAACCCGAAACCCGAAACCCGAAACCCGAAACCCGAAACCCCATATT	BnaC02T0215500ZS	MATCHED_REF	intron_variant	1	-4.08	10.69	-4.08	11.23	0.995406	BnaC02T0215500ZS_18910738
C02	18911148	18911148	A	U	AAGCCCAAACCCCATATTCCTTATTTTCTACTTCATATATTCCAAACCCC	TCTTTATTTCCATTCCAAACCACAATTCCCACATTTGCTTATTCATAAAA	BnaC02T0215500ZS	MATCHED_REF	intron_variant	1	-1.50	12.03	-1.50	12.21	0.999630	BnaC02T0215500ZS_18911148
C02	24042182	24042182	C	U	CAACAAAACAAATTATTCAACCAAATCATAATTCTAAACCTATTATACAA	CAAATCACAATCCTAACCAATCACCCTAACAAAAAACTATCAAAACTACA	BnaC02T0256800ZS	MATCHED_REF	intron_variant	1	-2.01	6.27	-2.01	6.40	0.999845	BnaC02T0256800ZS_24042182
C02	27019274	27019274	C	U	GTCTACTTCTATAACTTTTTTTGTTTTCTTTCAGTTTTGCTTTTACATTT	TTCATCTTCAATACCATACTTGCTCCAACGTTTTTTTTTTTGTTTTAAGG	BnaC02T0283700ZS	MATCHED_REF	intron_variant	1	-7.44	18.29	-7.44	17.41	0.952244	BnaC02T0283700ZS_27019274
C02	28773834	28773834	G	C	AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	GAGATGTGAGTAAAGTTGAGAACAGAGAAGAAGTTGAAGAGGATAATGTA	BnaC02T0300600ZS	MATCHED_REF	missense_variant	1	-3.94	8.37	-6.21	5.75	0.603863	BnaC02T0300600ZS_28773834
C02	29621428	29621428	A	G	TTCTATAACAACCACACTTTCAAGCAAACTTTCCATTCAATCTTATACGA	CAACAATAATGTCAAACCATCTTCAAGAGCCCTTACCCACTTACCCTAAG	BnaC02T0305700ZS	MATCHED_REF	intron_variant	1	-6.29	13.47	-6.05	21.12	0.848146	BnaC02T0305700ZS_29621428
C02	30468975	30468975	C	A	CTCTTCCATCTTCTCCTCCATTTTATTCCAAGTCCAATTCATCACCTAAG	AAACACATTAAACACAAGAAATTCATCACAAATCCAAAAGCCACAAAACA	BnaC02T0311300ZS	MATCHED_REF	intron_variant	1	-1.05	8.88	-3.22	11.84	0.707798	BnaC02T0311300ZS_30468975
C02	35297612	35297612	C	A	ACCCTAAACTCTAAACCCTAAACCCTAAATTTTAAACCCTAAACCCTAAA	TCTAAACCCTAAACCCTAAATCCTAAACCACACCCTTTAACTCTAAACCC	BnaC02T0349400ZS	MATCHED_REF	intron_variant	1	0.00	5.55	-1.56	4.11	0.434415	BnaC02T0349400ZS_35297612
C02	35297614	35297614	C	U	CCTAAACTCTAAACCCTAAACCCTAAATTTTAAACCCTAAACCCTAAACT	TAAACCCTAAACCCTAAATCCTAAACCACACCCTTTAACTCTAAACCCTA	BnaC02T0349400ZS	MATCHED_REF	intron_variant	1	0.00	5.56	-1.03	10.35	0.488988	BnaC02T0349400ZS_35297614
C02	50924213	50924213	A	G	GACGAAGACGAAGATGACGATGAAGAAGATGAAGAAAAAGAGAAGGAAAA	GAGAAAGAAGAGGAGAAGAAGAAGGAGAAGGAAAAGGAAAAAGGAACACT	BnaC02T0411700ZS	MATCHED_REF	synonymous_variant	1	-0.65	6.70	-0.65	6.83	0.998706	BnaC02T0411700ZS_50924213
C02	54252290	54252290	A	G	AGACTCATAGAATCCAAAAACCTGTAAAACTCAAAACACTAAAGCTATCC	AAAATATTCAAATACCCAAAAAGACAAATTTTACCCAAATCTTATCTAAG	BnaC02T0439900ZS	MATCHED_REF	intron_variant	1	-5.43	16.02	-6.93	18.14	0.764600	BnaC02T0439900ZS_54252290
C02	57557483	57557483	U	G	GAGGAAGAAGAGAAGAGTAAAGCAGAGAAGGAAGAGAAGAGGAAGAAGAA	AAAGAAGAGGAGGCAGATAACAAGAAGACAGAGGAAGACGAGAAGAAAGT	BnaC02T0470000ZS	MATCHED_REF	missense_variant	1	-0.80	4.64	-0.80	4.54	0.999592	BnaC02T0470000ZS_57557483
C02	57600965	57600965	A	U	AATCCAAGAAAAATGAAGAACAAAAGAAGAGAGAACATGAAAAAAACAAA	CGAATGAAAATGAAGAAGAGAAAAAGAAAGAACACGAAGAAAACAAATTT	BnaC02T0470900ZS	MATCHED_REF	missense_variant	1	-1.15	8.58	-2.10	9.73	0.613378	BnaC02T0470900ZS_57600965
C02	57600980	57600980	G	A	AAGAACAAAAGAAGAGAGAACATGAAAAAAACAAAACGAATGAAAATGAA	AAGAGAAAAAGAAAGAACACGAAGAAAACAAATTTAAAAAAGAAGAAGAA	BnaC02T0470900ZS	MATCHED_REF	missense_variant	1	-1.62	9.27	-1.15	8.43	0.976868	BnaC02T0470900ZS_57600980
C02	64223100	64223100	C	U	AACCCTAAATATTGTACTCCAAACCCTAAACTCTACATCTAAACCTTAAA	CCTTAACATAAACTTCAACTCAAAATTTAATATTTTTCAAAATTGATCTC	BnaC02T0544900ZS	MATCHED_REF	intron_variant	1	-4.18	15.03	-4.18	15.58	0.999114	BnaC02T0544900ZS_64223100
C03	2186692	2186692	U	C	CTTCTCTCCTTCTCTAGAAAACGAACTCTCTCATTACCTTCAAAAAAACC	TAAACCCTATTCATCATACACACTACTACACAGACGCAATTCTATCGCCT	BnaC03T0043200ZS	MATCHED_REF	5_prime_UTR_variant	1	-3.38	13.23	-3.38	13.16	0.999958	BnaC03T0043200ZS_2186692
C03	7630623	7630623	U	G	TCTTCCCCTCTCAACAACCAATACCCGACTCTTCCTCTTTTCAACAACAA	AACAATAACACTAACTTTACTTTCCCTAGACCTCCACCTCTCCTCCAACC	BnaC03T0142900ZS	MATCHED_REF	missense_variant	1	-0.52	4.93	-2.49	8.97	0.574174	BnaC03T0142900ZS_7630623
C03	7630641	7630641	U	C	CAATACCCGACTCTTCCTCTTTTCAACAACAATAACAATAACACTAACTT	ACTTTCCCTAGACCTCCACCTCTCCTCCAACCGCCTTCTTCACTCTTTGC	BnaC03T0142900ZS	MATCHED_REF	synonymous_variant	1	-0.52	6.04	-0.52	5.84	0.996136	BnaC03T0142900ZS_7630641
C03	7630829	7630829	A	G	CACTTCCTTTCTGACATTGCCTTACTCTTCCTCTGCTGCTCCAAACACTC	ACCCATTACTTACCATAACACTAACAATAATTACTCTTCGTTCTCATTAA	BnaC03T0142900ZS	MATCHED_REF	missense_variant	1	-0.47	12.23	-0.47	14.70	0.899194	BnaC03T0142900ZS_7630829
C03	7630881	7630881	U	C	CCCATTACTTACCATAACACTAACAATAATTACTCTTCGTTCTCATTAAA	CCTTCATCTTCGTCATATCCTACAACAACTTCTTCCCCAAGCTTTCTTCA	BnaC03T0142900ZS	MATCHED_REF	synonymous_variant	1	-0.49	10.89	-0.84	10.85	0.956363	BnaC03T0142900ZS_7630881
C03	7630893	7630893	G	U	CATAACACTAACAATAATTACTCTTCGTTCTCATTAAATCCTTCATCTTC	TCATATCCTACAACAACTTCTTCCCCAAGCTTTCTTCACTCCCATTACAC	BnaC03T0142900ZS	MATCHED_REF	synonymous_variant	1	-0.49	10.70	-0.49	8.90	0.903868	BnaC03T0142900ZS_7630893
C03	7630916	7630916	C	U	TTCGTTCTCATTAAATCCTTCATCTTCGTCATATCCTACAACAACTTCTT	CCCAAGCTTTCTTCACTCCCATTACACTCCTAATTCTTCTTCCACCTCCT	BnaC03T0142900ZS	MATCHED_REF	missense_variant	1	-0.49	9.33	-0.49	9.20	0.998489	BnaC03T0142900ZS_7630916
C03	15322593	15322593	A	U	CTAAACATAAAATTTTAAAACTTCAATCTTAAACTTAAACTCAAAATTTA	TAATTCTAAAAATTTAACCTCAAATTCCTATTTTAAACCTCAAACACTAA	BnaC03T0249900ZS	MATCHED_REF	intron_variant	1	-4.84	18.07	-5.18	15.07	0.949117	BnaC03T0249900ZS_15322593
C03	15484831	15484831	U	C	AACGCCGTTCATCCCTCACCACCTCCACCTCCACCAGCCTCAATCCCTAC	TTTCCCGCCAACATCTCTTCTCGCTTCTTCCCACCTCACAACTCATCCAA	BnaC03T0252200ZS	MATCHED_REF	synonymous_variant	1	-0.81	5.90	-0.81	5.54	0.994085	BnaC03T0252200ZS_15484831
C03	15484844	15484844	A	G	CCTCACCACCTCCACCTCCACCAGCCTCAATCCCTACTTTTCCCGCCAAC	TCTCTTCTCGCTTCTTCCCACCTCACAACTCATCCAAACCTCACAACAAC	BnaC03T0252200ZS	MATCHED_REF	missense_variant	1	-0.81	3.98	-2.56	3.52	0.636309	BnaC03T0252200ZS_15484844
C03	15484854	15484854	G	U	TCCACCTCCACCAGCCTCAATCCCTACTTTTCCCGCCAACATCTCTTCTC	CTTCTTCCCACCTCACAACTCATCCAAACCTCACAACAACAACCACCACA	BnaC03T0252200ZS	MATCHED_REF	missense_variant	1	-0.81	3.97	-0.18	2.31	0.697560	BnaC03T0252200ZS_15484854
C03	20988827	20988827	C	U	AAAAACAAACACAAAATATATTAATATATCACCTACTACTACAAAACACA	TAAAAATACCAAGTAATACTCTTAACAAATAAAAAAGACAACAAAATTAC	BnaC03T0313700ZS	MATCHED_REF	intron_variant	1	-4.74	10.33	-4.74	10.57	0.999354	BnaC03T0313700ZS_20988827
C03	21626058	21626058	U	C	CTAAACCTTTTTTTTTTAAATACGAACCCTAAACCCTAAAACATGAACTC	AAACACTAAACCCCCAAACATCAACTCTAAACTCTAAACCCTAAAACATA	BnaC03T0320600ZS	MATCHED_REF	intron_variant	1	-0.12	8.25	-0.12	8.28	0.995546	BnaC03T0320600ZS_21626058
C03	21626174	21626174	U	A	ACCCTAAACTTCAACTCTAAACCCTAAACCATCAATATTAAACCCTAAAC	ATCAACACTAAACTCTAAACCCTAAAAGTACACTCTAAACCCTAAACCCT	BnaC03T0320600ZS	MATCHED_REF	intron_variant	1	-1.05	4.41	-1.05	3.76	0.990850	BnaC03T0320600ZS_21626174
C03	21626187	21626187	C	U	ACTCTAAACCCTAAACCATCAATATTAAACCCTAAACTATCAACACTAAA	TCTAAACCCTAAAAGTACACTCTAAACCCTAAACCCTAAAAAATTAACCC	BnaC03T0320600ZS	MATCHED_REF	intron_variant	1	-1.05	4.43	-1.05	3.37	0.940611	BnaC03T0320600ZS_21626187
C03	22235311	22235311	U	C	AACACTTAATCATTAAAAATAAATTATAACCCATAAAATCAACATATAAC	ATTAAATATATAAATAAGGCCAACACAGAAAATAATTCACATATATACCT	BnaC03T0326700ZS	MATCHED_REF	intron_variant	1	-5.17	21.89	-4.51	20.95	0.937521	BnaC03T0326700ZS_22235311
C03	23490896	23490896	C	A	TTCTTCTCGTACCGTATCTTCATCTCCGCCTTGTTCTCTTTTCTCTTCCT	GCCACCTTCTCCGTCGTCCTCAACTCCTCTCGTCACCAACCTCACCTCGA	BnaC03T0345300ZS	MATCHED_REF	synonymous_variant	1	-3.24	12.80	-2.99	13.33	0.984077	BnaC03T0345300ZS_23490896
C03	27771893	27771893	A	C	CTCCACATCAATATCCCGGCCCACACTCTCCCCTTAACCACTCTCATAAC	AACGATCCACCCCACTCCTAGCTACTGACCACAACTCATCTGACCACGAA	BnaC03T0407000ZS	MATCHED_REF	missense_variant	1	-2.18	12.40	-2.18	12.77	0.978682	BnaC03T0407000ZS_27771893
C03	27956543	27956543	U	A	AGCCACCCGTCCCCGATTCTCCCTCAACTCAACAACCCTGCTCCCACCAA	TCCTCCACCACGACTTCGCCTACACCTACTCCAAACCCCCCGTCCTCGCC	BnaC03T0408600ZS	MATCHED_REF	missense_variant	1	-3.18	13.41	-3.62	13.87	0.864190	BnaC03T0408600ZS_27956543
C03	27956578	27956578	A	G	CCCTGCTCCCACCAATTCCTCCACCACGACTTCGCCTACACCTACTCCAA	CCCCCCGTCCTCGCCAACTACACTCTCCCCTCTCACTGCCCTTCCCAACA	BnaC03T0408600ZS	MATCHED_REF	synonymous_variant	1	-2.89	6.17	-4.04	8.17	0.862795	BnaC03T0408600ZS_27956578
C03	32320539	32320539	C	A	CTATCCAATTCTCAACTCCTTCACGCACTCCTCACCTTCTCCACCTCCCT	ACTCACGCTTCCACCGTCCTCTCACTTCCTTATCCTTCCGCCAATTCCCT	BnaC03T0458500ZS	MATCHED_REF	missense_variant	1	-1.33	4.05	-1.33	4.04	0.999993	BnaC03T0458500ZS_32320539
C03	33117886	33117886	A	G	TTCATCCGCCTTAAAAAAAACAAAAGTTAAACAAACATTAGAAATTAGAA	AAATGCATAAAAAACAAAATAAAAATACTTAAATAATTAAAAAAAAGATT	BnaC03T0463500ZS	MATCHED_REF	intron_variant	1	-3.97	13.89	-3.97	17.23	0.949479	BnaC03T0463500ZS_33117886
C03	33485096	33485096	C	U	ACTTTAAATCTAATTAAAAAAAAACTCCATTCAAAATCTTAAATGTAAAC	TTAAATCTCCATCAAATTCTATACCCTAAATCCTAACTTCAAACATAAAC	BnaC03T0466900ZS	MATCHED_REF	intron_variant	1	-2.80	5.66	-2.80	8.60	0.971820	BnaC03T0466900ZS_33485096
C03	33485227	33485227	U	A	AATTTTAAAAATTTAACAAACTTCAAATTTAAATCTTAATCACAAACTTT	ATATACAACTCTAACTCCTACACTTTCAAAACTTTCAATCCCTAAATCAT	BnaC03T0466900ZS	MATCHED_REF	intron_variant	1	-2.09	13.61	-2.53	11.40	0.918022	BnaC03T0466900ZS_33485227
C03	68500968	68500968	U	C	CCATATTCCTTATTTTCTACTTCATATATTCCAAACCCCATCTTTATTTC	ATTCCAAACCACAATTCCCACATTTGCTTATTCATAAAACAAACTCCCAC	BnaC03T0710000ZS	MATCHED_REF	intron_variant	1	-1.35	12.83	-1.35	10.81	0.965644	BnaC03T0710000ZS_68500968
C03	69384357	69384357	U	A	CTCAATCAAACTCAAAGCCCTAAACCTCTCCACCTCCTTCCTCCCTCCAC	CTCATTCACCACCCCATCCTCCTCCCTTCCCCAATCCACCCGCCGCTCCT	BnaC03T0718900ZS	MATCHED_REF	missense_variant	1	-0.39	2.11	-0.39	2.11	0.999997	BnaC03T0718900ZS_69384357
C03	72077577	72077577	A	C	AAAATAACATTTTTTACCTTAAATTTTAAACCCTAAACATGCCCTAAACC	TAACTACATATCTCAAACCCTATATCTTAAATTCCATTTTATACATAAAT	BnaC03T0743000ZS	MATCHED_REF	intron_variant	1	-5.61	12.21	-4.64	13.67	0.933113	BnaC03T0743000ZS_72077577
C03	72077597	72077597	C	U	AAATTTTAAACCCTAAACATGCCCTAAACCATAACTACATATCTCAAACC	TATATCTTAAATTCCATTTTATACATAAATCTTCAAATAAACATTTTAAT	BnaC03T0743000ZS	MATCHED_REF	intron_variant	1	-2.99	13.83	-3.72	13.24	0.927519	BnaC03T0743000ZS_72077597
C03	75453555	75453555	C	U	CTCTCCTCCTCCACCACCACCACCACAACAACAACCTCATCCTCTTCCTC	TCCGCCATTCTCAAGACAACTAAACGACACCCATCTCCCTTACTCCCTCG	BnaC03T0780000ZS	MATCHED_REF	synonymous_variant	1	-0.45	5.75	-0.90	6.50	0.830456	BnaC03T0780000ZS_75453555
C04	6502472	6502472	C	A	AACTGTTTCTTTCTCTTCCGTTTCTTCTATTTCAAACCTTTCAGCTCTTC	TTCTTTCAATTCTATTCCTTCTTTCAATTCTCTTCCAGCTTCTCGACTCA	BnaC04T0074300ZS	MATCHED_REF	missense_variant	1	-3.37	12.43	-3.37	12.47	0.999966	BnaC04T0074300ZS_6502472
C04	11206901	11206901	U	C	ATTTGAAATCTTATTCCCAAAACCTCATTTCTCAACTCTAAACCCTAAAC	CTAAACTCTAAACCCTAAACCATAAACCCTAAACCCAAAACCCTAAACCC	BnaC04T0123700ZS	MATCHED_REF	intron_variant	1	-3.05	2.80	-3.05	2.80	1.000000	BnaC04T0123700ZS_11206901
C04	16977384	16977384	C	U	CCTTCTTCTCCAACATCATTTTTACGTTCTTCACCTCCATTTTTTCATCA	CATTTCTTAAAAATCAAACTCAAACTCAAACTTAAGTGTCATTCATCTAA	BnaC04T0180700ZS	MATCHED_REF	intron_variant	1	-6.41	8.56	-6.41	8.61	0.999998	BnaC04T0180700ZS_16977384
C04	18292117	18292117	A	C	CAACTCTAAACCCTAAACCCTGAAACATCAACCCTAAACCCTATCCCCTA	ACCTTCAACTCTAAACCCTAAGACATCAACTCTAAACCCTAAACCCTAAA	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.97	5.35	-1.97	5.34	0.999999	BnaC04T0191600ZS_18292117
C04	18292210	18292210	A	C	ACCCTAAACTTCAACTTTAAACCCTAAACCCTAAACTATCAACACTAAAC	CTAAACCCTAAAAAGTAAACTCTAAACCCTAAAAAGTAAACTCCAAACCC	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.92	9.18	-1.92	8.57	0.985818	BnaC04T0191600ZS_18292210
C04	18292268	18292268	A	U	CTAAAAAGTAAACTCTAAACCCTAAAAAGTAAACTCCAAACCCTAAAAAA	TAACTCTAAACCCCGAAACATCAACTCTAAACCCTAAACCCTAAACCTTC	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.86	7.58	-1.86	8.07	0.998496	BnaC04T0191600ZS_18292268
C04	18292273	18292273	U	C	AAGTAAACTCTAAACCCTAAAAAGTAAACTCCAAACCCTAAAAAAATAAC	CTAAACCCCGAAACATCAACTCTAAACCCTAAACCCTAAACCTTCAACTC	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.86	7.81	-1.66	7.14	0.963842	BnaC04T0191600ZS_18292273
C04	18292280	18292280	C	U	CTCTAAACCCTAAAAAGTAAACTCCAAACCCTAAAAAAATAACTCTAAAC	CCGAAACATCAACTCTAAACCCTAAACCCTAAACCTTCAACTCTAAACCC	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-0.33	4.45	-0.33	4.59	0.998799	BnaC04T0191600ZS_18292280
C04	18293350	18293350	C	A	ACCCTATACCATCAACACTAAACCCTAAACTATCAACACTAAACCCTAAA	CCTAAAAGTAAACTCTAAACCCTAAACCCTAAAAAATTAAACCTAAACCC	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.05	2.74	-1.05	3.01	0.988852	BnaC04T0191600ZS_18293350
C04	18293368	18293368	A	C	TAAACCCTAAACTATCAACACTAAACCCTAAACCCTAAAAGTAAACTCTA	ACCCTAAACCCTAAAAAATTAAACCTAAACCCTAACACATCATCTCTAAA	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.05	2.62	-1.47	3.25	0.687947	BnaC04T0191600ZS_18293368
C04	18293404	18293404	C	A	AAAAGTAAACTCTAAACCCTAAACCCTAAAAAATTAAACCTAAACCCTAA	ACATCATCTCTAAACCCTAAACCCTAAACCTTCAACTCTAAACCCTAAAC	BnaC04T0191600ZS	MATCHED_REF	intron_variant	1	-1.05	1.49	-1.05	1.48	0.999992	BnaC04T0191600ZS_18293404
C04	31861292	31861292	U	A	CCCTAAATCTAAACTTAAAACATCAACTCTAAACCCTAAATTATCAACTC	AAACCCTAAACCATGAAATATCAACTCTAAAACCTAAACCCTGAAACATC	BnaC04T0233800ZS	MATCHED_REF	intron_variant	1	-1.26	6.11	-1.26	6.17	0.999225	BnaC04T0233800ZS_31861292
C04	31861311	31861311	U	C	ACATCAACTCTAAACCCTAAATTATCAACTCTAAACCCTAAACCATGAAA	ATCAACTCTAAAACCTAAACCCTGAAACATCAACTCTAAACACTAAACTC	BnaC04T0233800ZS	MATCHED_REF	intron_variant	1	-1.95	7.17	-1.95	6.32	0.993034	BnaC04T0233800ZS_31861311
C04	36573214	36573214	C	A	AAACAACTTTGCCACTTTCTTGCCATCCACACAATACACTCACCCTTTTC	ACCATTATTGCTTCCCCTTTACTTCCCCTCAAAAACACTTTATCATGTAA	BnaC04T0262800ZS	MATCHED_REF	5_prime_UTR_variant	1	-5.74	6.61	-5.74	7.10	0.999741	BnaC04T0262800ZS_36573214
C04	39427687	39427687	U	A	CTCTCTCTCTCTCCCATTTTCATTTTTCCTCTAATTTCACCTTTTTTTTT	TTTTCCCTCTTATTTACTCCATCTTTCCCAGTCACACATTACTACTATTC	BnaC04T0287000ZS	MATCHED_REF	intron_variant	1	-1.41	2.90	-1.41	3.30	0.997493	BnaC04T0287000ZS_39427687
C04	43401429	43401429	U	A	TTCTACACTCTCCACCACCCAGACGCCACTCCTCCTCATATCTTCTCCCC	AACACACACAACTCCCTCACTCTCCGCCGCCTCTTCCTCTCCTCCGCCTC	BnaC04T0321100ZS	MATCHED_REF	synonymous_variant	1	-3.06	3.41	-3.06	3.42	1.000000	BnaC04T0321100ZS_43401429
C04	46581521	46581521	C	U	TCTTCCTCCACCCTCCTCTATTCTCTTTCTCTCTTCCTCTTCCTCTCCCT	TCACTCCTCTTCTTCCTCTCCCCTCACATCCTCCTCTCTTCCTCCGGCAA	BnaC04T0348900ZS	MATCHED_REF	synonymous_variant	1	-0.26	3.21	-0.26	3.21	1.000000	BnaC04T0348900ZS_46581521
C04	46721352	46721352	U	C	ACTCTAAATCTTAAATTCTAAATCCTATACCCTAAATTTTAAATCCAAAT	CAAATCTCTAAACTCAGACCCTATATCCTAAATCCTAATCCTAGATCCTA	BnaC04T0350200ZS	MATCHED_REF	intron_variant	1	-2.95	17.86	-2.72	16.65	0.938700	BnaC04T0350200ZS_46721352
C04	64296859	64296859	A	C	ACGTTATTCACTTATACATTCACTTATCCTTTCACATCCTTATTCACTTT	ACTTATCCATTCTCATTCTCATTCACTTTCCTTTACACTTAGACTCGTAC	BnaC04T0517900ZS	MATCHED_REF	intron_variant	1	-2.26	8.64	-1.13	7.79	0.714682	BnaC04T0517900ZS_64296859
C04	66217510	66217510	C	U	TTTTTCTTTTAACCCCCTATTTTTTACCTTTTAATACTCCACATCATATT	TCTTTTATCCATATCATATTTCTTTTTCCACCTAATCATTTAACATATAT	BnaC04T0542400ZS	MATCHED_REF	intron_variant	1	-1.22	8.65	-1.22	8.74	0.999985	BnaC04T0542400ZS_66217510
C04	66217519	66217519	C	A	TAACCCCCTATTTTTTACCTTTTAATACTCCACATCATATTCTCTTTTAT	CATATCATATTTCTTTTTCCACCTAATCATTTAACATATATTTAATTTTT	BnaC04T0542400ZS	MATCHED_REF	intron_variant	1	-1.22	10.70	-1.50	11.26	0.995073	BnaC04T0542400ZS_66217519
C04	66217521	66217521	A	C	ACCCCCTATTTTTTACCTTTTAATACTCCACATCATATTCTCTTTTATCC	TATCATATTTCTTTTTCCACCTAATCATTTAACATATATTTAATTTTTAT	BnaC04T0542400ZS	MATCHED_REF	intron_variant	1	-1.22	12.86	-0.55	10.68	0.690317	BnaC04T0542400ZS_66217521
C04	69623043	69623043	U	C	ATCTCCACCACCACCGTACTACTACCACTCTCCTCCTCCCCCAGTTAAAT	TCCACCGCCGCCATACTATTATCACTCTCCACCACCACCAGTCAAATCTC	BnaC04T0592200ZS	MATCHED_REF	missense_variant	1	-1.12	9.53	-1.69	8.60	0.929023	BnaC04T0592200ZS_69623043
C05	3729182	3729182	U	G	TCTCTCTCTTATTTTTTTTTTTTAATTTACTCAACCCTATAATCTCTCTT	CACCTCTTTTCTTCCTCTCTCTATCTCCCACCTGCTGATCTCTACTCGTT	BnaC05T0065100ZS	MATCHED_REF	intron_variant	1	-1.64	7.07	-1.64	8.03	0.954924	BnaC05T0065100ZS_3729182
C05	6819922	6819922	A	C	AAACCCTAAAACATCAACTCTAAACCCTAAACGTAAACCCTAAACCCTAA	TCTAAACTTAAAACATCAACTTTTAACCCTAAATCATCAACTCTAAACCC	BnaC05T0111800ZS	MATCHED_REF	intron_variant	1	-0.58	6.70	-0.58	6.13	0.995086	BnaC05T0111800ZS_6819922
C05	7415569	7415569	C	A	GTACGTCTCTCATTAACTCTACTATTTTTTTTTCTATTTCTTCATTATAT	TAACCTTCGCTTTTTTTCATTTGTCCTCTATCAGCACCGTATTCATCTTC	BnaC05T0118700ZS	MATCHED_REF	missense_variant	1	-3.87	9.84	-3.87	11.13	0.989465	BnaC05T0118700ZS_7415569
C05	8349648	8349648	A	G	GAAACAACCTCAACTCCTCAACGTCCACACCAAGCCTCTAAACCAAACCA	AATCCTCTTCACCAAACCCAAACAACAAACCAAAATCCTAGTACTGACAT	BnaC05T0132800ZS	MATCHED_REF	synonymous_variant	1	-2.01	6.60	-2.01	11.99	0.755170	BnaC05T0132800ZS_8349648
C05	10166218	10166218	A	G	ATCATAAAAACAAAAACAAATCGAAATATAAATAACATAATGATTAAACG	GAAAGGACAAATAGGAATGAAATAATAAAAACAAAAACAAATTGAAATAT	BnaC05T0157600ZS	MATCHED_REF	intron_variant	1	-5.48	13.83	-4.89	12.31	0.892000	BnaC05T0157600ZS_10166218
C05	42092003	42092003	G	A	AAGGGATAAATGGATAAAGGGATAAAGGGGTAAAGGGGTAAAGGGGTAAA	GGGTAAAAGGGTAAAAGGGTAAAAGGGTAAAAAGGTAAAAGGGATAAAGG	BnaC05T0374200ZS	MATCHED_REF	intron_variant	1	-0.52	7.68	-0.52	7.60	0.999952	BnaC05T0374200ZS_42092003
C05	42334443	42334443	C	U	AACCCTAAACCCCACCCCTAAACTCTAAACCCTAAACCCTAAACCCTAAA	CCTAAATCCTAAACCCAACTCCTTAACTCTAAACCTTAATGTCTAAATTA	BnaC05T0375500ZS	MATCHED_REF	intron_variant	1	-1.65	3.67	-1.65	3.68	0.999994	BnaC05T0375500ZS_42334443
C05	49662333	49662333	A	U	ATTCGAAACCCTAAACCATAAAACATCAACTCTAAACCCTAAACCCTGAA	CATCAACTCCAAACCCTAAACCCTAAACCTTCAAATCTAAACTCTAATAC	BnaC05T0445500ZS	MATCHED_REF	intron_variant	1	-0.81	3.84	-0.81	4.26	0.980201	BnaC05T0445500ZS_49662333
C05	49662518	49662518	A	U	AACCCTAAACCATGAAACATCAACTCTAAACCCTAAACCCCGAAACATCC	ACTCTAAACCCTAAATTTTAAACCTTCAAATCTAAACCCTAAATCATCAA	BnaC05T0445500ZS	MATCHED_REF	intron_variant	1	-1.14	8.41	-1.14	8.41	0.999996	BnaC05T0445500ZS_49662518
C06	6793175	6793175	U	A	TCCCAAATTATTGACTTCTAAGCATCCACTATCATTTTCTATATCTTAAC	ACTTTTTTCTTTTTCTACACTTGTACAAATCTAAACGACTATATTAACGA	BnaC06T0013500ZS	MATCHED_REF	intron_variant	1	-5.44	14.73	-4.80	17.24	0.959611	BnaC06T0013500ZS_6793175
C06	14506737	14506737	G	A	GTTGGTGGAAGGAAGAAAAAGACGGTGAGGGGGAAGAAGAAGAAGAAGGC	GAGGAGAGAAGAGGAAGTAAGTTAATGAAGTGGTGGAAGAGGGTTTTAAA	BnaC06T0075500ZS	MATCHED_REF	synonymous_variant	1	-7.70	17.39	-6.66	19.15	0.980172	BnaC06T0075500ZS_14506737
C06	17341070	17341070	C	A	CTAACCCTATCCATGACGACATCCACAATAACTTGAGCCTTGACCACAAA	ATCCTAACCCTTAACAAATTCTAATCCACAACCATCCTAAAAATAAACTG	BnaC06T0097600ZS	MATCHED_REF	intron_variant	1	-3.47	10.55	-3.47	10.04	0.995819	BnaC06T0097600ZS_17341070
C06	26428725	26428725	U	C	CATCATCATCTCCTTCTCTTCCATCAATACCCTTAACCAGACCTCATATT	ACACCTCCATACCCTTCTTCACCATACCTCCTGAATCAACACAACATCGC	BnaC06T0163500ZS	MATCHED_REF	missense_variant	1	-1.31	6.23	-1.31	7.67	0.811447	BnaC06T0163500ZS_26428725
C06	30457647	30457647	C	U	AATTTTACATTATACATTTCAAAAATAAAAAACACTAAACAACACAAAAA	AAAATCACTAATCTTAACTCAAACACTATATCTCAAACCCTAAAATCTAT	BnaC06T0196100ZS	MATCHED_REF	intron_variant	1	-0.29	7.58	-0.30	9.13	0.877062	BnaC06T0196100ZS_30457647
C06	41003486	41003486	U	C	CCCTAAATCGTAAATTCTAAATCCTACATCCTAAATTCTAAACCCAAATC	AAACCCCTAAACCCAAACCCTATACCCTAAACCCTAATCCTAGACCCTAA	BnaC06T0305900ZS	MATCHED_REF	intron_variant	1	-0.95	7.24	-0.95	6.48	0.989139	BnaC06T0305900ZS_41003486
C06	41003500	41003500	C	U	TTCTAAATCCTACATCCTAAATTCTAAACCCAAATCTAAACCCCTAAACC	AAACCCTATACCCTAAACCCTAATCCTAGACCCTAAACCCAAATTATATA	BnaC06T0305900ZS	MATCHED_REF	intron_variant	1	-0.83	5.62	-0.83	5.68	0.999797	BnaC06T0305900ZS_41003500
C06	42220636	42220636	C	U	TCTACCATTTTCCCAAACATACAATTACACAATCATTCTCAAATGTCAAA	CCAACTCACATCTCTCACCAAAAGATCCTAAGAACATTAACTCCTTCTCT	BnaC06T0316800ZS	MATCHED_REF	intron_variant	1	-4.65	12.15	-4.65	12.48	0.999441	BnaC06T0316800ZS_42220636
C06	42436532	42436532	U	C	CATGCATGTCCCTAAACCCATCTCCTCCTAAGTCCCCAAACCAAAGCAAA	CCATCTCCTCATCAAAACCCTTCATCACCCTCCCAACCCCACCAAAACCC	BnaC06T0318800ZS	MATCHED_REF	missense_variant	1	-1.93	7.92	-1.93	7.79	0.999201	BnaC06T0318800ZS_42436532
C06	43756382	43756382	U	C	AGTCTCCTCCTCCGTTCCTACACCCTCCCTCAAACCACCATTCTCTCCTC	CTCAACCCCTCAATCAAACCGAATCCCCAAAACCAACTTCATCGTCGACT	BnaC06T0331700ZS.1	MATCHED_REF	missense_variant	1	-4.58	6.60	-4.58	6.57	0.999997	BnaC06T0331700ZS.1_43756382
C06	43756388	43756388	C	U	CTCCTCCGTTCCTACACCCTCCCTCAAACCACCATTCTCTCCTCTCTCAA	CCCTCAATCAAACCGAATCCCCAAAACCAACTTCATCGTCGACTTCTTCC	BnaC06T0331700ZS.1	MATCHED_REF	missense_variant	1	-2.44	9.44	-2.44	9.46	0.999983	BnaC06T0331700ZS.1_43756388
C06	50144290	50144290	U	C	TGTTATGTTTAAATCCCTAGAATCCGAAACCCGAAACCCCATACCCGAAA	CCCATACCCGAAACCCCAAACCCCAATCCCCAAACCCGAAACCCGAAAGC	BnaC06T0419300ZS	MATCHED_REF	intron_variant	1	-3.83	17.42	-3.89	15.40	0.901198	BnaC06T0419300ZS_50144290
C07	11796290	11796290	A	C	CGTCCACGCTTCACCCATCCATACCTCACCCATCCATACCTCACCCATCC	TGCATCACCCATTCATACCTCACCCATCCATAATTCCCAAACACCTTCAT	BnaC07T0072100ZS	MATCHED_REF	intron_variant	1	-1.61	6.11	-1.61	1.52	0.643095	BnaC07T0072100ZS_11796290
C07	23982544	23982544	C	U	TTTTTATTTTTTTAAATTTGAAATCTTATCCCAAAACCTCATTTCTCAAC	CTAAACTCTAAACCCTAAACTCTAAACCCTAAACCCTAAATTCTAAATTC	BnaC07T0120500ZS	MATCHED_REF	intron_variant	1	-4.66	8.83	-4.66	9.28	0.999762	BnaC07T0120500ZS_23982544
C07	40128680	40128680	U	C	TTACAGCAACACAGTCTTCTCCTTCTCCTTCACCAATCCCAAACCCAACA	CTCTCCACCAACTCTCCTCCGCTCCCTCTCCTACTTCTCCCCTCACCAAC	BnaC07T0254700ZS	MATCHED_REF	missense_variant	1	-1.49	4.28	-1.49	4.27	0.999999	BnaC07T0254700ZS_40128680
C07	44246516	44246516	U	C	CGCCACCACCACTACTAACTCTCTCTCTAGTCTCCTGAAATCAAATTCCA	CATGCAACACCATTTTCTTCATTATCAACATCACCAACATATTCTTCACC	BnaC07T0297700ZS	MATCHED_REF	5_prime_UTR_variant	1	-3.53	13.29	-3.31	12.45	0.985608	BnaC07T0297700ZS_44246516
C07	45635338	45635338	G	U	AAGAAGAAGGTTGAGGAAGAGGAGAAGCGAAAGAAGGAAGAAGAGGAAGA	AAGAAGAGAATAAAGGAAAAGAAAGCAGAGATGAAGGGAAAGAAGGATGA	BnaC07T0314900ZS	MATCHED_REF	missense_variant	1	-2.19	5.22	-2.19	6.13	0.970087	BnaC07T0314900ZS_45635338
C07	45635364	45635364	C	A	GCGAAAGAAGGAAGAAGAGGAAGAGAAGAAGAGAATAAAGGAAAAGAAAG	AGAGATGAAGGGAAAGAAGGATGAGAAGAAGAAAAAGATTGAAGAAAATG	BnaC07T0314900ZS	MATCHED_REF	missense_variant	1	-3.68	2.62	-1.54	2.26	0.826137	BnaC07T0314900ZS_45635364
C07	50678457	50678457	U	A	AACACAAACGCTCTCAACCTCTTCGCCGATATCCACCGTTCCACAACTCC	AAACCCGATCAGTACACCCTCTCCTCCGCCATCACCGCCGCTTCCCACCT	BnaC07T0385200ZS	MATCHED_REF	synonymous_variant	1	-6.00	14.40	-6.00	14.39	0.999997	BnaC07T0385200ZS_50678457
C07	51552614	51552614	A	U	AATTTTTTACAGCTTTAAAATAAATAAAAATAAATAAATACAGAAAAAAC	AAAAATACAATAAAAAAATCAACCTGAAAATCACTCATAATTCAAATCAA	BnaC07T0399500ZS	MATCHED_REF	intron_variant	1	-3.27	20.54	-3.24	21.12	0.969579	BnaC07T0399500ZS_51552614
C07	51552634	51552634	C	A	TAAATAAAAATAAATAAATACAGAAAAAACAAAAAATACAATAAAAAAAT	AACCTGAAAATCACTCATAATTCAAATCAATAAATTTAAAATTTCATCAA	BnaC07T0399500ZS	MATCHED_REF	intron_variant	1	-2.20	14.80	-2.20	14.49	0.982860	BnaC07T0399500ZS_51552634
C07	53550684	53550684	A	C	TTAAACAAGACAACAACAATATAAAAAAACTAAACAAAAAAACTTTTAAA	ATTACATGAAGACATAACTATTACACAAATTTAAATATCAACAACACTAA	BnaC07T0429100ZS	MATCHED_REF	intron_variant	1	-2.64	13.54	-2.64	12.20	0.967140	BnaC07T0429100ZS_53550684
C07	55020652	55020652	C	G	AAACATAAAGAGGAGAAAGGAATGAAAAAGTTGAATGAAAAAAAAAAAAT	AAAGAAAAATACAAACAAAGAAGAAAAAAATCGAAGAAAAAAATGAAGAA	BnaC07T0447900ZS	MATCHED_REF	intron_variant	1	-2.37	12.52	-1.96	10.33	0.770473	BnaC07T0447900ZS_55020652
C07	55823196	55823196	U	C	TGATACCAACCAAAACCAAAACCACCTCTTTCTCTTTCCTTAAAGCATTT	CTTTTCGCATCGTTCCTCCCACACGCCTCTCTCTCTCAGATCACTTGTTC	BnaC07T0461100ZS	MATCHED_REF	missense_variant	1	-4.80	17.31	-4.80	16.76	0.995964	BnaC07T0461100ZS_55823196
C08	607232	607232	G	A	CAGCTACTCTTCTCAAACCCAATCCTCCTCCTCCGCCGCATAAACCGACC	TCATCACCGCCTCCGTATCTCCTCCTCTTCGCCACACCCTCCTCCGCCGC	BnaC08T0006100ZS	MATCHED_REF	missense_variant	1	-3.66	13.49	-3.66	8.81	0.889773	BnaC08T0006100ZS_607232
C08	6434257	6434257	A	C	GAAGCATTCATCACCACCACAACCACAATATAACAAGCATATTCACTACC	TCACCTAACTCTAACCACCACCTAACTCTAACCATCACCTAACTCTAAGC	BnaC08T0056100ZS	MATCHED_REF	intron_variant	1	-3.23	4.92	-3.23	4.92	1.000000	BnaC08T0056100ZS_6434257
C08	6434259	6434259	C	A	AGCATTCATCACCACCACAACCACAATATAACAAGCATATTCACTACCAT	ACCTAACTCTAACCACCACCTAACTCTAACCATCACCTAACTCTAAGCAT	BnaC08T0056100ZS	MATCHED_REF	intron_variant	1	-2.03	3.87	-2.03	4.72	0.995810	BnaC08T0056100ZS_6434259
C08	6949536	6949536	G	A	AGAGGAAGAATAAACCAGATGAAAGCAGGAGTAGAAAAGGAAGAAAGCAG	AGGGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAAGTAGGAGGAGAAAAC	BnaC08T0058600ZS	MATCHED_REF	missense_variant	1	-3.36	6.56	-3.36	6.75	0.997936	BnaC08T0058600ZS_6949536
C08	11304925	11304925	U	C	TAATCCTCCTCTCAGCCTCTCTCTTCCCCATAAACCCACCTTTAATCTCT	CCACAAAACCCCTAAATCCATTGTCTCCGCCGTCACATCCCCATATCCAA	BnaC08T0080200ZS	MATCHED_REF	missense_variant	1	-1.82	7.29	-1.82	7.27	0.999991	BnaC08T0080200ZS_11304925
C08	33530594	33530594	C	A	CATCAACTCTAAACCCTAAACCATGAAACATCAACTCTAAACCCTAAACC	TAAACCCTAAACCTTCAAATCTAAAAACTAAAACATCAACTCTAAACCCT	BnaC08T0240600ZS	MATCHED_REF	intron_variant	1	-1.14	3.21	-1.14	3.37	0.998955	BnaC08T0240600ZS_33530594
C08	33530596	33530596	A	U	TCAACTCTAAACCCTAAACCATGAAACATCAACTCTAAACCCTAAACCCT	AACCCTAAACCTTCAAATCTAAAAACTAAAACATCAACTCTAAACCCTAA	BnaC08T0240600ZS	MATCHED_REF	intron_variant	1	-1.14	3.12	-1.14	3.69	0.996022	BnaC08T0240600ZS_33530596
C08	33538432	33538432	C	U	AGTACACCCAAATCTCTACAGTTTTCTTCCTCAATGCCAGCAATACCATT	TCATTCTCTAATTCAAGCCTACTATCTTCTAATTCTCGCCTACAATCATC	BnaC08T0240600ZS	MATCHED_REF	intron_variant	1	-4.98	18.60	-4.98	16.47	0.989195	BnaC08T0240600ZS_33538432
C08	33538455	33538455	U	C	TTCTTCCTCAATGCCAGCAATACCATTCTCATTCTCTAATTCAAGCCTAC	ATCTTCTAATTCTCGCCTACAATCATCTTCTATATTTCCAAATTCCTCTT	BnaC08T0240600ZS	MATCHED_REF	intron_variant	1	-4.09	7.79	-4.09	6.98	0.999469	BnaC08T0240600ZS_33538455
C08	39449715	39449715	A	C	ATTCTTCTTCTCTCAATACAAAATTTTCTTAATTCTTTCATTTTCTTAAT	TTTTTTTCTCAACCATTTTCATATTCTTCTTCTTTCATTTTCTCAACCTA	BnaC08T0308500ZS	MATCHED_REF	intron_variant	1	-0.25	11.87	-0.25	10.21	0.896218	BnaC08T0308500ZS_39449715
C09	6191848	6191848	C	U	AATTTCTCCTCACTCTATATAAACTCTCGCACATCTTCACATTTTCCACA	AACTCACAAAACATGTCTTCTTCGTTTCTCTCATCTACTGCTTCTTTTTT	BnaC09T0092400ZS	MATCHED_REF	intron_variant	1	-1.81	11.89	-1.91	12.15	0.957093	BnaC09T0092400ZS_6191848
C09	9254478	9254478	A	C	CATGCTCTTTCTCCAGTTCCTCTCTCTTCTCCTTCAACCTCCCTAATCAA	ACTCTCTCCACCGTCGTCCACCAACCCTCCCCCGTCACGCCATCGTCTCC	BnaC09T0126400ZS	MATCHED_REF	missense_variant	1	-4.27	11.08	-4.27	10.98	0.995491	BnaC09T0126400ZS_9254478
C09	13419668	13419668	G	C	ACCTATTCTAATTCCATCATAATCTCACTCCATCCTAATCTACTTCCATC	TAAACTAATTCCAAACCTAATCTAATCACCTAACTAACCGCCTAAAACTA	BnaC09T0169000ZS	MATCHED_REF	intron_variant	1	-0.95	2.49	0.00	1.26	0.020641	BnaC09T0169000ZS_13419668
C09	15957555	15957555	C	A	AATTTTAAAATTAACATCAACAATATATTTTCCAACATTATCCACCTAAT	AACACTAAATAACATAAAATCCGCAAACCTATCTAAATTCCCTATACTAA	BnaC09T0188300ZS	MATCHED_REF	intron_variant	1	-2.40	6.62	-2.40	8.64	0.995949	BnaC09T0188300ZS_15957555
C09	15958026	15958026	C	G	TAGAACCCCAAACCCGAAACCCGAAACCCCAAACCCCAAGCCCCAAACCC	AAACCCGAAACCCGAAACCCCAACCCCGAAACCCGAAACCCCAAACCCGA	BnaC09T0188300ZS	MATCHED_REF	intron_variant	1	-3.06	5.32	-3.09	7.03	0.943779	BnaC09T0188300ZS_15958026
C09	15959144	15959144	C	U	CCAAACCCCAAACCCCATATTCCTTATTTTCTACTTCATATATTCCAAAC	CCCATCTTTAATTTTCTACTTCATATATTCCAAACCCCATATTTAATTTT	BnaC09T0188300ZS	MATCHED_REF	intron_variant	1	-1.49	5.16	-1.49	5.16	1.000000	BnaC09T0188300ZS_15959144
C09	15959402	15959402	C	G	CGAAACCCGAAACCCCAACCCCCAAACCCCATACCCTAAACCCGAAACCC	AAACCCGAAACCCGAAACCCCAAACCTGAAACCCCAAACCCGAAACCCGA	BnaC09T0188300ZS	MATCHED_REF	intron_variant	1	-2.99	5.37	-4.01	7.44	0.897590	BnaC09T0188300ZS_15959402
C09	17481919	17481919	A	U	CCTATTACACAACAAATCACAATCCTACCCAATCACCCTAACAAAAATCT	TAAAAAAACTTCTAAAATCATCAAATCTACTTAAAAACCTAACAAATAAG	BnaC09T0198600ZS	MATCHED_REF	intron_variant	1	-0.40	3.01	-0.40	5.51	0.928336	BnaC09T0198600ZS_17481919
C09	20123452	20123452	U	C	AGGAAAGAAAATACTAAGACCTAATTAATTCATAAATTTAAACAGCAAAA	TCATCAAGTAAAACGCCATACCCACATCATAAACCCTCTAATAATAGTCT	BnaC09T0222600ZS	MATCHED_REF	intron_variant	1	-6.96	14.84	-4.95	19.07	0.640491	BnaC09T0222600ZS_20123452
C09	23830218	23830218	U	C	GAAGCATTCATCACCACCACAACCACAATATAACAAGCATATTCACTACC	TAACCTAACTCTAACCATCACCTAACTCTAATTACCATCACCTAACTCTA	BnaC09T0254600ZS	MATCHED_REF	intron_variant	1	-3.23	4.72	-3.23	4.55	0.999947	BnaC09T0254600ZS_23830218
C09	24920938	24920938	C	A	CAATCAAAATATATAAACTAATAACACCTCATAAATTTTAAATTCAAAAC	CTAAACCTTAAATCCTAAACCCAACCCCTATAACCTAAACTCAAATCCTA	BnaC09T0262800ZS	MATCHED_REF	intron_variant	1	-2.21	3.61	-2.21	3.61	1.000000	BnaC09T0262800ZS_24920938
C09	24920963	24920963	C	A	ACCTCATAAATTTTAAATTCAAAACCCTAAACCTTAAATCCTAAACCCAA	CCCTATAACCTAAACTCAAATCCTAGACCCTAAACCCAAACCATATACTT	BnaC09T0262800ZS	MATCHED_REF	intron_variant	1	-0.04	8.33	-0.04	8.33	0.999999	BnaC09T0262800ZS_24920963
C09	24921003	24921003	A	G	CTAAACCCAACCCCTATAACCTAAACTCAAATCCTAGACCCTAAACCCAA	CCATATACTTTAAACCCAAATCTCATACCCTAAACCCAAACCGTAAACAT	BnaC09T0262800ZS	MATCHED_REF	intron_variant	1	-0.01	6.71	-1.19	7.83	0.616374	BnaC09T0262800ZS_24921003
C09	30484546	30484546	C	U	CCCTAAACCCTAAAAAGTAAACTCTAAACCCTAAACCCTAAAAAATTAAC	ATAAACCCTAAAACATCAACTTTAAACCCTAAAACCGAAACCTTCAACTC	BnaC09T0306900ZS	MATCHED_REF	intron_variant	1	-2.36	7.84	-2.36	8.10	0.999619	BnaC09T0306900ZS_30484546
C09	44803958	44803958	U	C	AAAATAAACACAAAACATATTAACATTTTACTTACTACTACATAATATAA	AAAAATATCAAATAATACTCTTAACAAATAAAAACAACCAAATAATGTTT	BnaC09T0351900ZS	MATCHED_REF	intron_variant	1	-5.25	21.69	-4.56	16.34	0.864550	BnaC09T0351900ZS_44803958
C09	44804397	44804397	C	A	TGTCCCTGCCTTTACACCTTCTCCAATTCCCTTCATAACGTTACTTCCCA	TCCTCCGACTCATAAAGACCCCTCCATTACTACAACAATCCAAGAAATTG	BnaC09T0351900ZS	MATCHED_REF	intron_variant	1	-3.38	16.13	-3.38	16.07	0.999037	BnaC09T0351900ZS_44804397
C09	47324749	47324749	C	U	TGAAAAAAAATGATGCCACTAACATAACTCTAAATCTTAAATTCTAAACT	AAACTCTAAACCCTAAATCCTAAACCCAAACTCTAAACCCTAAATCCTAA	BnaC09T0370100ZS	MATCHED_REF	intron_variant	1	-2.48	5.81	-2.48	6.55	0.996712	BnaC09T0370100ZS_47324749
C09	49261312	49261312	A	G	AGGATGAGGATGAAGATAAAGAGGAGGAGACAAAGGACGAGAAGGAAGAT	AAAAAGAAGAGAGCATGGATGAGAAAGAAGATGAAAAAGAAAAGAACAAT	BnaC09T0385100ZS	MATCHED_REF	missense_variant	1	-2.04	6.12	-2.04	7.95	0.961585	BnaC09T0385100ZS_49261312
C09	62921332	62921332	G	A	GATGAGGATGAAGAGGAAGATGATGAGGGTAGTAATGACAAGGAAGAGGA	AACAAAGAGGTTGGGGATAAGGAAGAAGTGAGTGAAGGCGGTAATAAACA	BnaC09T0533500ZS	MATCHED_REF	synonymous_variant	1	-6.63	15.96	-6.63	16.64	0.993075	BnaC09T0533500ZS_62921332
C09	64202567	64202567	C	U	ACCCTTCTCCTCCTCTTCTTCCTCGTTTTCATCACTCCACACGTCTCATC	TTTCTTCAACCTGTCCAGCCTCCCAATTCTCCCCAAGTAATCAAATCTTT	BnaC09T0554600ZS	MATCHED_REF	synonymous_variant	1	-2.83	9.40	-2.83	9.97	0.999520	BnaC09T0554600ZS_64202567
C09	64202596	64202596	C	A	CATCACTCCACACGTCTCATCCTTTCTTCAACCTGTCCAGCCTCCCAATT	TCCCCAAGTAATCAAATCTTTCACTCAATGTCTCTTTTTTTTTTCCTAAT	BnaC09T0554600ZS	MATCHED_REF	missense_variant	1	-5.30	8.28	-6.37	6.21	0.731706	BnaC09T0554600ZS_64202596
C09	64827882	64827882	C	U	TCATCTGCTTCTTAATCGCCTCCTTCTCTCTCTCTCTATCTGAACTTCCT	CCTCTATTCTCACCGCTTTTCCTTCTCCACCGATTTATATTTTTTCCCCT	BnaC09T0565700ZS	MATCHED_REF	5_prime_UTR_variant	1	-2.14	8.49	-2.14	8.53	0.999907	BnaC09T0565700ZS_64827882
C09	64827883	64827883	C	U	CATCTGCTTCTTAATCGCCTCCTTCTCTCTCTCTCTATCTGAACTTCCTC	CTCTATTCTCACCGCTTTTCCTTCTCCACCGATTTATATTTTTTCCCCTA	BnaC09T0565700ZS	MATCHED_REF	5_prime_UTR_variant	1	-2.14	8.47	-2.14	8.44	0.997232	BnaC09T0565700ZS_64827883
C09	67843685	67843685	U	C	TTTATATCTTATCCCCAAAACCTCATTTCTCGATTTTAAACCCTAAACCC	AAACTCTAAACCCTAAATCCTAAACCCTAAACCCTAAACTCTAAACCCTA	BnaC09T0616600ZS	MATCHED_REF	intron_variant	1	-2.72	4.97	-2.72	3.75	0.995816	BnaC09T0616600ZS_67843685
