Demo: Running dadi on Simulated Data

Running mini_dadi on simulated genomic data.

dadi demo on msprime-simulated data. Panel A: Observed SFS from msprime vs dadi’s diffusion approximation prediction. Panel B: Allele frequency density evolution under the Crank-Nicolson PDE solver. Panel C: SFS predictions under three demographic models. Panel D: Residuals between observed and predicted SFS entries.

This figure was generated by running the mini_dadi implementation on data simulated with msprime. The script is at figures/fig_demo_dadi.py.