Demo: Running momi2 on Simulated Data

Running mini_momi2 on simulated genomic data.

../../_images/fig_demo_momi2.png — momi2 demo on msprime-simulated data. Panel A: Observed SFS from msprime vs momi2’s W-matrix prediction using coalescent expected sojourn times. Panel B: Visualization of the Polanski-Kimmel W-matrix. Panel C: Expected sojourn time with j lineages for different epoch durations. Panel D: Moran transition matrix structure.

This figure was generated by running the mini_momi2 implementation on data simulated with msprime. The script is at figures/fig_demo_momi2.py.