Demo: Running msprime on Simulated Data

Running mini_msprime on simulated genomic data.

msprime demo. Panel A: Simulated TMRCA distributions under different effective population sizes, matching the expected exponential scaling. Panel B: Site frequency spectrum from coalescent simulation vs the classic neutral expectation. Panel C: Genotype matrix visualization from a simulated tree sequence. Panel D: Fenwick tree performance scaling demonstrating the logarithmic query time.

This figure was generated by running the mini_msprime implementation on data simulated with msprime. The script is at figures/fig_demo_msprime.py.