Demo: Running Relate on Simulated Data

Running mini_relate on simulated genomic data.

../../_images/fig_demo_relate.png — Relate demo on msprime-simulated data. Panel A: Input haplotype matrix from msprime (12 haplotypes, 200 kb) with the focal SNP marked. Panel B: Relate-inferred pairwise distance matrix from the asymmetric painting at the focal SNP. Panel C: True pairwise divergence matrix from the simulated tree sequence. Panel D: True vs inferred distances (normalized) with Pearson correlation.

This figure was generated by running the mini_relate implementation on data simulated with msprime. The script is at figures/fig_demo_relate.py.