Demo: Running SINGER on Simulated Data

Running mini_singer on simulated genomic data.

../../_images/fig_demo_singer.png — SINGER demo on msprime-simulated data. Panel A: True marginal trees along a 50 kb region. Panel B: SINGER emission probabilities for match/mismatch allele patterns as a function of branch length. Panel C: PSMC-like transition density for different source times. Panel D: Tree height vs total branch length for the true marginal trees.

This figure was generated by running the mini_singer implementation on data simulated with msprime. The script is at figures/fig_demo_singer.py.