Demo: Running SLiM on Simulated Data

Running mini_slim on simulated genomic data.

SLiM demo of forward-time simulation. Panel A: Mean population fitness over generations under neutral and deleterious DFE scenarios. Panel B: Number of segregating sites over time – purifying selection reduces diversity. Panel C: Mean mutations per individual, showing accumulation under mutation-selection balance. Panel D: Kimura fixation probability as a function of selection coefficient.

This figure was generated by running the mini_slim implementation on data simulated with msprime. The script is at figures/fig_demo_slim.py.