Demo: Running tsdate on Simulated Data

Running mini_tsdate on simulated genomic data.

tsdate demo on msprime-simulated data. Panel A: True vs inferred node times – gamma posterior means compared to true coalescence times. Panel B: Coalescent prior distributions by descendant count. Panel C: Mutation likelihood functions for different mutation counts. Panel D: Tree span vs number of mutations across the tree sequence.

This figure was generated by running the mini_tsdate implementation on data simulated with msprime. The script is at figures/fig_demo_tsdate.py.